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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G579020
Reference: TK1151 Chr: Chr02 Coordinates: 149376967-149378634 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1668 bp · TkA02G579020|TK1151|cDNA

ATGCTTAGTGGAGGCTTACCTTCAGAGTTTTTCAATTGTCGATCATTAAAGATGTTATTGCTCTCGGAAAATAATTTTGATGGCAAGATCGACGGAGGCTCCACCCCAACATCATTTACCCAACTTGCCAACCTCACTTACCTTGACCTTTCACATAACAATTTCATAGGCTTATGGGATCTGAGTGCATTGTTATTCAGTCTACCAAACCTTGAAATTCTCTCTCTCTCTTATAGCGGCTTAATTGTTGTGAGCAACAA...

CDS

Download CDS FASTA

1668 bp · TkA02G579020|TK1151|CDS

ATGCTTAGTGGAGGCTTACCTTCAGAGTTTTTCAATTGTCGATCATTAAAGATGTTATTGCTCTCGGAAAATAATTTTGATGGCAAGATCGACGGAGGCTCCACCCCAACATCATTTACCCAACTTGCCAACCTCACTTACCTTGACCTTTCACATAACAATTTCATAGGCTTATGGGATCTGAGTGCATTGTTATTCAGTCTACCAAACCTTGAAATTCTCTCTCTCTCTTATAGCGGCTTAATTGTTGTGAGCAACAA...

Protein

Download Protein FASTA

555 aa · TkA02G579020|TK1151|PROTEIN

MLSGGLPSEFFNCRSLKMLLLSENNFDGKIDGGSTPTSFTQLANLTYLDLSHNNFIGLWDLSALLFSLPNLEILSLSYSGLIVVSNNNTRYVNHVFRDLGLASCNLLVFPESLRALKNLTYLDLSSNNIHGRIPDWAQEIGGNGLRLLDLSNNFITSLHARFQWGGLHYVFLQSNQIKGPFPPSICGMSSLRYLDISNNSFDGVLPQCLGNMTSSLESLSVKSNKLQGSFPSLLCNMSLLISLDMSSNNFRGEIPQCFGN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G579020
TK1151 IDTkA02G579020
OH-1004 IDLXL04_012243
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)73.600
Protein coverage (%)TK1151 95.676 / OH-1004 53.753
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G579020
LocationChr02:149376967-149378634 (+)
DescriptionSimilar to RLP6: Receptor-like protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g33080 Receptor like protein 28. No verified direct reference in this release
At2g32680 Involved in the perception of necrosis and ethylene-inducing peptide 1-like proteins (NLPs), that act as extracellular signals mediating immune activation.
An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity.2015 · DOI: 10.1038/nplants.2015.140
At2g33020 Receptor like protein 24. No verified direct reference in this release
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At3g23010 Receptor-like protein 36. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012243 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT2G15080
ath:AT3G11010
ath:AT3G11080
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.851
Rank 1 · TkA02G579020 · TK1151
Endoplasmic reticulum0.100
Rank 2 · TkA02G579020 · TK1151
Cytoplasm0.062
Rank 3 · TkA02G579020 · TK1151
Nucleus0.048
Rank 4 · TkA02G579020 · TK1151
Extracellular0.027
Rank 5 · TkA02G579020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_12-13 aa
PF23598LRR_146-74 aa
PF24758LRR_At5g563706-79 aa
PF13855LRR_810-55 aa
PF13516LRR_613-28 aa
PF29247LRR_MHP1-HER1-GIP314-56 aa
PF00560LRR_115-33 aa
PF12799LRR_415-62 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G579020PF00560LRR_12131.1e-41132.5
TkA02G579020PF23598LRR_146745.9e-1658.9
TkA02G579020PF24758LRR_At5g563706791.7e-0525.4
TkA02G579020PF13855LRR_810552.7e-32111.0
TkA02G579020PF13516LRR_613284.7e-1348.8
TkA02G579020PF29247LRR_MHP1-HER1-GIP314560.0314.3
TkA02G579020PF00560LRR_115331.1e-41132.5
TkA02G579020PF12799LRR_415621.6e-30105.2
TkA02G579020PF25019LRR_R13L1-DRL2131771.49.6
TkA02G579020PF13855LRR_836782.7e-32111.0
TkA02G579020PF25013LRR_Zer-140552.4e-0628.5
TkA02G579020PF24048LRR_NXF1-542790.09813.0
TkA02G579020PF13516LRR_643574.7e-1348.8
TkA02G579020PF29870YDR417C43570.03514.9
TkA02G579020PF00560LRR_144571.1e-41132.5
TkA02G579020PF12799LRR_444791.6e-30105.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49325Arabidopsis thalianasp|O49325|RLP28_ARATH Receptor like protein 2836.100%Swiss-ProtMedium
O48849Arabidopsis thalianasp|O48849|RLP23_ARATH Receptor like protein 2333.300%Swiss-ProtMedium
O49329Arabidopsis thalianasp|O49329|RP24L_ARATH Receptor like protein 2441.800%Swiss-ProtMedium
Q9C699Arabidopsis thalianasp|Q9C699|RLP7_ARATH Receptor-like protein 725.700%Swiss-ProtLow
Q1PEN0Arabidopsis thalianasp|Q1PEN0|RLP36_ARATH Receptor-like protein 3637.900%Swiss-ProtLow

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