TkA02G575710 | RubberDandelionOmics

Gene overview

TkA02G575710

Reference: TK1151 Chr: Chr02 Coordinates: 148550555-148551643 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · TkA02G575710|TK1151|cDNA

ATGGGCTGCAGACTGCAAGTTCTGAGTAAATGTGAAGATCCCTTCAAAAAACCACTTCACTTTGATGATGGGTTTGCTTTTGATCAAGGAAATGTTGAAAGAAGACAAACATTTCACAATAGGAGTTCCTTCAGCAGTATGATGCACATAAACCTGGAGACACATTTCAAAATATCTCAGAGGACTTCTTCCGAAATGGCTGCTTCTTGTGATGGCACAGTTCACAGATGGAATAGCCGATCAGGAAAGGGCATATCTGT...

CDS

Download CDS FASTA

654 bp · TkA02G575710|TK1151|CDS

ATGGGCTGCAGACTGCAAGTTCTGAGTAAATGTGAAGATCCCTTCAAAAAACCACTTCACTTTGATGATGGGTTTGCTTTTGATCAAGGAAATGTTGAAAGAAGACAAACATTTCACAATAGGAGTTCCTTCAGCAGTATGATGCACATAAACCTGGAGACACATTTCAAAATATCTCAGAGGACTTCTTCCGAAATGGCTGCTTCTTGTGATGGCACAGTTCACAGATGGAATAGCCGATCAGGAAAGGGCATATCTGT...

Protein

Download Protein FASTA

217 aa · TkA02G575710|TK1151|PROTEIN

MGCRLQVLSKCEDPFKKPLHFDDGFAFDQGNVERRQTFHNRSSFSSMMHINLETHFKISQRTSSEMAASCDGTVHRWNSRSGKGISVISESSGQYGTSSRNSDQANMLDFCSLRSGFLSNSYDARVYICTHHLETLNRLLTRPGNGSLMLLDSRSGNLINSWQAHDGYVTKVWFCFQFLTCRFFFMLYIWVFSSVNFNLFTLYTPHGKRFNTPKKCR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G575710`
TK1151 ID	TkA02G575710
OH-1004 ID	LXL04_027999
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.300
Protein coverage (%)	TK1151 100.000 / OH-1004 94.737 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G575710

Location Chr02:148550555-148551643 (+)

Description Similar to GFS12: Protein GFS12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18525`	May act predominantly to suppress BCHC1, which itself is a negative factor in protein storage vacuole (PSV) trafficking regulation and plant effector triggered immunity (ETI).	BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis.2015 · DOI: 10.1016/j.molp.2014.11.015

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027999 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:2000643 positive regulation of early endosome to late endosome transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005770 late endosome Cellular Component

GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G18525

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.468

Rank 1 · TkA02G575710 · TK1151

Cytoplasm0.379

Rank 2 · TkA02G575710 · TK1151

Mitochondrion0.124

Rank 3 · TkA02G575710 · TK1151

Endoplasmic reticulum0.053

Rank 4 · TkA02G575710 · TK1151

Cell membrane0.052

Rank 5 · TkA02G575710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25175Beta-prop_WDR566-128 aa

PF25174Beta-prop_THOC366-172 aa

PF14397ATPgrasp_ST74-129 aa

PF25175Beta-prop_WDR5131-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G575710	`PF25175`	Beta-prop_WDR5	66	128	0.088	12.8
TkA02G575710	`PF25174`	Beta-prop_THOC3	66	172	0.11	12.3
TkA02G575710	`PF14397`	ATPgrasp_ST	74	129	0.17	11.8
TkA02G575710	`PF25175`	Beta-prop_WDR5	131	175	0.088	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JY12`	Arabidopsis thaliana	sp\|F4JY12\|GFS12_ARATH Protein GFS12	33.600%	Swiss-Prot	Medium

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