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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G571110
Reference: TK1151 Chr: Chr02 Coordinates: 147456994-147461256 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2641 bp · TkA02G571110|TK1151|cDNA

CTAACGAAGAAATATCTCCGTATATCTGAATTAAATACAGAACGGACTGAAAGAGGGTAAAACTTAACCTAAACCTGCAACAATTCAGGCTTCAGCGCCGCTCTTCCTTTCTTCCTCTAGTATCTCTTCTCCGATCGGCAGATATTTTTCTCTCGTCGTCATTTGAGATCAGTCATCTACACCCGGATACAGGAAAAGATTACGCAACAGGAAATTATAATCCCATCTTGATAAGTTTTTGGCCATAGTTTATAACCCAT...

CDS

Download CDS FASTA

1539 bp · TkA02G571110|TK1151|CDS

ATGCCAAGAACCCGGGCAAGGGCAGGGGCAGGGGCAGCTTCCAAGACCGAACCTCAAGATGCTGCAAAGATAGAAAAAGAAGCCGCATCCGAAACTGAAGAGCAGGTTGACTTTGAAGAAGAGGAGCCTGTTGAAGAGGAAGTTGTTGAATATGAAGAAGTAGAAGAAGAAGTCGAGGAAGAAGAAGAAGAGGTTGAAGAAGATGAAGAAGAAGAAGAAGTTGAAGAAGATGAAGAAGAAGAAGAAGAAGTTGAAGAGGA...

Protein

Download Protein FASTA

512 aa · TkA02G571110|TK1151|PROTEIN

MPRTRARAGAGAASKTEPQDAAKIEKEAASETEEQVDFEEEEPVEEEVVEYEEVEEEVEEEEEEVEEDEEEEEVEEDEEEEEEVEEEVEEEDNDDIKKGQDEEMENADEEEEDTKKIYDQLLSLPPYGSEVYLGGIPLNVSEDDIKTFCESIGEVTEVRIMRGKDASENKGYAFVTFRTKELASTAIKDLHTKELKGKRVRCSTSQAKHKLFIGNVPKNWTLEDMDKVVRKVGPGINSVELLKDPQNSRRNRGFAFIEYY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G571110
TK1151 IDTkA02G571110
OH-1004 IDLXL04_012351
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G571110
LocationChr02:147456994-147461256 (+)
DescriptionSimilar to LIF2: Heterogeneous nuclear ribonucleoprotein Q
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g00830 Transcriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes.
Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1.2011 · DOI: 10.1371/journal.pone.0016592
The hnRNP-Q protein LIF2 participates in the plant immune response.2014 · DOI: 10.1371/journal.pone.0099343
The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.2016 · DOI: 10.1105/tpc.16.00244
At1g71770 Binds the poly(A) tail of mRNA.
Differential organ-specific expression of three poly(A)-binding-protein genes from Arabidopsis thaliana.1993 · DOI: 10.1073/pnas.90.14.6686
A pollen-, ovule-, and early embryo-specific poly(A) binding protein from Arabidopsis complements essential functions in yeast.1996 · DOI: 10.1105/tpc.8.8.1261

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012351 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0007623 circadian rhythm Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010439 regulation of glucosinolate biosynthetic process Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0016556 mRNA modification Biological Process
KEGG gene cross-reference
ath:AT4G00830
hsa:10492
hsa:29974
mmu:56403
rno:363113
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.878
Rank 1 · TkA02G571110 · TK1151
Cytoplasm0.212
Rank 2 · TkA02G571110 · TK1151
Cell membrane0.044
Rank 3 · TkA02G571110 · TK1151
Endoplasmic reticulum0.026
Rank 4 · TkA02G571110 · TK1151
Mitochondrion0.015
Rank 5 · TkA02G571110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02724CDC4541-112 aa
PF14703PHM7_cyt50-68 aa
PF14703PHM7_cyt103-199 aa
PF16367RRM_7130-190 aa
PF28978RRM_SRRT130-180 aa
PF24825SNU71_RBD130-164 aa
PF00076RRM_1131-201 aa
PF23085RRM_PARP14_3131-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G571110PF02724CDC45411121.08.3
TkA02G571110PF14703PHM7_cyt50680.01616.1
TkA02G571110PF14703PHM7_cyt1031990.01616.1
TkA02G571110PF16367RRM_71301902.8e-0937.5
TkA02G571110PF28978RRM_SRRT1301801.1e-0629.5
TkA02G571110PF24825SNU71_RBD1301640.002119.2
TkA02G571110PF00076RRM_11312012e-46156.4
TkA02G571110PF23085RRM_PARP14_31311924.5e-0833.8
TkA02G571110PF15407Spo7_2_N1311530.09813.0
TkA02G571110PF07576BRAP21331901.4e-0525.9
TkA02G571110PF28441RRM_111332070.00219.1
TkA02G571110PF26250RRM_RdRP1_21341880.005217.9
TkA02G571110PF16842RRM_occluded1352051.2e-1041.8
TkA02G571110PF22976RRM_101361872e-0834.9
TkA02G571110PF29326RRM_MUD2_C1432030.01715.9
TkA02G571110PF13893RRM_51522070.0005120.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ASP6Arabidopsis thalianasp|Q9ASP6|HNRPQ_ARATH Heterogeneous nuclear ribonucleoprotein Q51.600%Swiss-ProtHigh
Q05196Arabidopsis thalianasp|Q05196|PABP5_ARATH Polyadenylate-binding protein 526.500%Swiss-ProtLow

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