TkA02G567610 | RubberDandelionOmics

Gene overview

TkA02G567610

Reference: TK1151 Chr: Chr02 Coordinates: 146647236-146651592 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2076 bp · TkA02G567610|TK1151|cDNA

TACATGACTATCTTTCTTTGGGCTTTGTAACTTTTTAACAGCCCAAATCTTTGTCGACGAGTAAAAAAACACCGGACACGTGTTTCAAGCGCACCCAGCCTAAAAAGTTTGTTCTGATGAGGCAGAGTGGCAGACGATAATTTCTCGATAATTATTATGGACACGTGGCAATGAATGAACGGGACACACCAACTAACCCACGCTCATCATATGCTCTAGATCGACCTTCGAGAAAGTTCTTGAGAATTCGTGGCTCGGAA...

CDS

Download CDS FASTA

1440 bp · TkA02G567610|TK1151|CDS

ATGAATGGTGAAGGTGATGACGACATGAAAAGGGAGATGAAGATTGACGAAAAGTCAGTGTATATGTGGGGTTATTTACCTGGAGCTTTACCTCAACGTTCACCGATTTTGTGTCCGGTGGAAGTTAGACTTCCGCAGTCAATTGACGCTGGTCAGCTCTGGTCGGCAGTTTGTGGCGGCGGTTGTGGATTTGCCATGGCCATTTCAGACACAGGGAAGCTGATCACATGGGGTTCAACAGACGATCTAGGGCAAAGCTA...

Protein

Download Protein FASTA

479 aa · TkA02G567610|TK1151|PROTEIN

MNGEGDDDMKREMKIDEKSVYMWGYLPGALPQRSPILCPVEVRLPQSIDAGQLWSAVCGGGCGFAMAISDTGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPKEVSIVRAAAGWAHCVCVTGAGEVYTWGWKECVPSGKVVGDPNTSQSQEKDTFERHNPFIPEQGTILSPRSGGSRSTDVKAVGDESTKRRRVSSSKQAVESSSSDNEPLSALPCLVALNPGVRISTVAAGGRHTLALSDMGQVWGWGYGGEGQLGLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G567610`
TK1151 ID	TkA02G567610
OH-1004 ID	LXL04_012390
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G567610

Location Chr02:146647236-146651592 (-)

Description Similar to UVR8: Ultraviolet-B receptor UVR8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63860`	UV-B specific signaling component that acts as a UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants.	A UV-B-specific signaling component orchestrates plant UV protection.2005 · DOI: 10.1073/pnas.0507187102 UV-B promotes rapid nuclear translocation of the Arabidopsis UV-B specific signaling component UVR8 and activates its function in the nucleus.2007 · DOI: 10.1105/tpc.107.053330 UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH.2008 · DOI: 10.1104/pp.107.108456 Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2009 · DOI: 10.1038/emboj.2009.4 UVR8 in Arabidopsis thaliana regulates multiple aspects of cellular differentiation during leaf development in response to ultraviolet B radiation.2009 · DOI: 10.1111/j.1469-8137.2009.02855.x Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2010 · DOI: 10.1073/pnas.0914532107 Functional interaction of the circadian clock and UV RESISTANCE LOCUS 8-controlled UV-B signaling pathways in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04573.x Perception of UV-B by the Arabidopsis UVR8 protein.2011 · DOI: 10.1126/science.1200660 UVR8 mediates UV-B-induced Arabidopsis defense responses against Botrytis cinerea by controlling sinapate accumulation.2012 · DOI: 10.1093/mp/sss025 C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein.2012 · DOI: 10.1073/pnas.1210898109 In vivo function of tryptophans in the Arabidopsis UV-B photoreceptor UVR8.2012 · DOI: 10.1105/tpc.112.101451 The UV-B photoreceptor UVR8 promotes photosynthetic efficiency in Arabidopsis thaliana exposed to elevated levels of UV-B.2012 · DOI: 10.1007/s11120-012-9785-y

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012390 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0009411 response to UV Biological Process

GO:0009649 entrainment of circadian clock Biological Process

GO:0010224 response to UV-B Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045879 negative regulation of smoothened signaling pathway Biological Process

GO:0000785 chromatin Cellular Component

GO:0001650 fibrillar center Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G63860

mmu:67345

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.564

Rank 1 · TkA02G567610 · TK1151

Cytoplasm0.438

Rank 2 · TkA02G567610 · TK1151

Mitochondrion0.069

Rank 3 · TkA02G567610 · TK1151

Cell membrane0.040

Rank 4 · TkA02G567610 · TK1151

Golgi apparatus0.031

Rank 5 · TkA02G567610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13540RCC1_218-24 aa

PF00415RCC119-24 aa

PF25390WD40_RLD37-139 aa

PF00415RCC138-64 aa

PF13540RCC1_263-84 aa

PF00415RCC172-121 aa

PF25384Alsin_RLD104-199 aa

PF13540RCC1_2108-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G567610	`PF13540`	RCC1_2	18	24	1e-38	130.8
TkA02G567610	`PF00415`	RCC1	19	24	1.2e-55	186.5
TkA02G567610	`PF25390`	WD40_RLD	37	139	1.4e-68	232.6
TkA02G567610	`PF00415`	RCC1	38	64	1.2e-55	186.5
TkA02G567610	`PF13540`	RCC1_2	63	84	1e-38	130.8
TkA02G567610	`PF00415`	RCC1	72	121	1.2e-55	186.5
TkA02G567610	`PF25384`	Alsin_RLD	104	199	2.7e-10	40.7
TkA02G567610	`PF13540`	RCC1_2	108	132	1e-38	130.8
TkA02G567610	`PF01344`	Kelch_1	116	128	0.47	10.7
TkA02G567610	`PF00415`	RCC1	125	132	1.2e-55	186.5
TkA02G567610	`PF25390`	WD40_RLD	210	472	1.4e-68	232.6
TkA02G567610	`PF00415`	RCC1	214	240	1.2e-55	186.5
TkA02G567610	`PF25384`	Alsin_RLD	225	278	2.7e-10	40.7
TkA02G567610	`PF13540`	RCC1_2	227	256	1e-38	130.8
TkA02G567610	`PF00415`	RCC1	244	271	1.2e-55	186.5
TkA02G567610	`PF00415`	RCC1	303	318	1.2e-55	186.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN03`	Arabidopsis thaliana	sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8	41.800%	Swiss-Prot	Low

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