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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G567540
Reference: TK1151 Chr: Chr02 Coordinates: 146615192-146616709 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1440 bp · TkA02G567540|TK1151|cDNA

ATGAAATTTACTCACATTTCACCACTCAATTACAGATTCAGTCATCAATTTCCTCATAAGAAACCTACCGGATACACCGTTATCTGCAGTTCAAGTACTCGACCCAAGAGAAATTCGAAACCTGAAGAAAACGCAGAGGCTCTCGAATTAGTACGGACCCTCATGAAAAATTTCAACTACGACAAACCATTGGTGTCTACACTAAACAAGTACGTAAAGTTAGTGAGGACCGAACACTGTTTTCTTCTCTTCGAAGAGCT...

CDS

Download CDS FASTA

1440 bp · TkA02G567540|TK1151|CDS

ATGAAATTTACTCACATTTCACCACTCAATTACAGATTCAGTCATCAATTTCCTCATAAGAAACCTACCGGATACACCGTTATCTGCAGTTCAAGTACTCGACCCAAGAGAAATTCGAAACCTGAAGAAAACGCAGAGGCTCTCGAATTAGTACGGACCCTCATGAAAAATTTCAACTACGACAAACCATTGGTGTCTACACTAAACAAGTACGTAAAGTTAGTGAGGACCGAACACTGTTTTCTTCTCTTCGAAGAGCT...

Protein

Download Protein FASTA

479 aa · TkA02G567540|TK1151|PROTEIN

MKFTHISPLNYRFSHQFPHKKPTGYTVICSSSTRPKRNSKPEENAEALELVRTLMKNFNYDKPLVSTLNKYVKLVRTEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYVADNGVYSKLISVMGKKGQTRLAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKSKALSKALGYFDKMKGTERCKPSIVTYNILLRASAQAKNIPQVETLFQDLEESIATPDIFTFNGVMDAYGKNGMIIEMEKVLSRMKSNQIKPDVIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G567540
TK1151 IDTkA02G567540
OH-1004 IDLXL04_032299
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)27.400
Protein coverage (%)TK1151 44.259 / OH-1004 44.351
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G567540
LocationChr02:146615192-146616709 (-)
DescriptionSimilar to EMB2750: Pentatricopeptide repeat-containing protein At3g06430, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g39620 Essential for embryo development. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0750400 Involved in the biogenesis of the plastid translation machinery by promoting the splicing of group II introns in chloroplasts. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032299 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000373 Group II intron splicing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009555 pollen development Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0048868 pollen tube development Biological Process
GO:0005730 nucleolus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003727 single-stranded RNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G06430
ath:AT3G53170
ath:AT5G48730
zma:100126361
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.561
Rank 1 · TkA02G567540 · TK1151
Plastid0.244
Rank 2 · TkA02G567540 · TK1151
Nucleus0.081
Rank 3 · TkA02G567540 · TK1151
Cytoplasm0.022
Rank 4 · TkA02G567540 · TK1151
Cell membrane0.009
Rank 5 · TkA02G567540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02758PYRIN40-59 aa
PF10037MRP-S2740-72 aa
PF00637Clathrin44-93 aa
PF20431E_motif48-63 aa
PF29070MSC6_N64-90 aa
PF01535PPR69-89 aa
PF13041PPR_284-106 aa
PF01535PPR87-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G567540PF02758PYRIN40590.01815.9
TkA02G567540PF10037MRP-S2740720.1212.0
TkA02G567540PF00637Clathrin44930.02415.1
TkA02G567540PF20431E_motif48630.1413.2
TkA02G567540PF29070MSC6_N64901.5e-1867.8
TkA02G567540PF01535PPR69896.1e-42139.7
TkA02G567540PF13041PPR_2841065.1e-46155.3
TkA02G567540PF01535PPR871016.1e-42139.7
TkA02G567540PF10037MRP-S27941690.1212.0
TkA02G567540PF23276TPR_24982131.5e-1248.2
TkA02G567540PF13041PPR_21151585.1e-46155.3
TkA02G567540PF01535PPR1151446.1e-42139.7
TkA02G567540PF12854PPR_11151401.7e-29101.9
TkA02G567540PF13812PPR_31161571.1e-37128.6
TkA02G567540PF00637Clathrin1161790.02415.1
TkA02G567540PF17177PPR_long1242624.2e-1453.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SV96Arabidopsis thalianasp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic73.000%Swiss-ProtHigh
A3ABE1Oryza sativa subsp. japonicasp|A3ABE1|PPR5_ORYSJ Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic76.500%Swiss-ProtHigh

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