TkA02G567050 | RubberDandelionOmics

Gene overview

TkA02G567050

Reference: TK1151 Chr: Chr02 Coordinates: 146519844-146520878 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · TkA02G567050|TK1151|cDNA

ATGGCAGCCGTATCCCTCCTCCTCACCCTCACCCTGATCACCTTCACCGGAGATGTCATCTCCTCCACCACTCCCTACCTCTCACCAGAAACCCTCTTTTCCAATTACGACAAGATGCTCGACTCTTTCAAAATCTTCGTCTACGCTACCCCACCCATCACCGACGGCACTATCTTCACCACCACACAAGAGTCCCAATTCTACACATCCCTCATCCAAAGTCCTTTCGTGACCGAAGACCCTAGCCAGGCTCACCTCTA...

CDS

Download CDS FASTA

693 bp · TkA02G567050|TK1151|CDS

ATGGCAGCCGTATCCCTCCTCCTCACCCTCACCCTGATCACCTTCACCGGAGATGTCATCTCCTCCACCACTCCCTACCTCTCACCAGAAACCCTCTTTTCCAATTACGACAAGATGCTCGACTCTTTCAAAATCTTCGTCTACGCTACCCCACCCATCACCGACGGCACTATCTTCACCACCACACAAGAGTCCCAATTCTACACATCCCTCATCCAAAGTCCTTTCGTGACCGAAGACCCTAGCCAGGCTCACCTCTA...

Protein

Download Protein FASTA

230 aa · TkA02G567050|TK1151|PROTEIN

MAAVSLLLTLTLITFTGDVISSTTPYLSPETLFSNYDKMLDSFKIFVYATPPITDGTIFTTTQESQFYTSLIQSPFVTEDPSQAHLYFVPFPSSLSTRNLARLIRNIRVSYPFWNRTLGADHFYLSATGVDSSSDRNIVELKKNSIQISCFPTSSGLFIPHKDITLPPGLRRVLDVIELSRYEQMKESGEAVTQHLAWNAEPQPHDAFHMVIYQLWLRRHTIRYARWVEQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G567050`
TK1151 ID	TkA02G567050
OH-1004 ID	LXL04_012403
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	66.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G567050

Location Chr02:146519844-146520878 (-)

Description Similar to At5g25310: Probable glycosyltransferase At5g25310

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g20260`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012403 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0010398 xylogalacturonan metabolic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0035252 UDP-xylosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G11130

ath:AT5G20260

ath:AT5G25310

ath:AT5G33290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.399

Rank 1 · TkA02G567050 · TK1151

Endoplasmic reticulum0.293

Rank 2 · TkA02G567050 · TK1151

Nucleus0.123

Rank 3 · TkA02G567050 · TK1151

Cytoplasm0.072

Rank 4 · TkA02G567050 · TK1151

Cell membrane0.071

Rank 5 · TkA02G567050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT4741-174 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G567050	`PF03016`	Exostosin_GT47	41	174	1.2e-15	58.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFN2`	Arabidopsis thaliana	sp\|Q9FFN2\|GLYT3_ARATH Probable glycosyltransferase At5g03795	30.100%	Swiss-Prot	Medium
`Q3E9A4`	Arabidopsis thaliana	sp\|Q3E9A4\|GLYT5_ARATH Probable glycosyltransferase At5g20260	28.900%	Swiss-Prot	Low
`Q9LFP3`	Arabidopsis thaliana	sp\|Q9LFP3\|GLYT4_ARATH Probable glycosyltransferase At5g11130	28.900%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card