Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1338 bp · TkA02G564430|TK1151|cDNA
ATTGATTATGGTGAGAGCCGACGGCGATACACGATTTGAATGCTTTTTACTCTTCCGCCGGAAAAATGCACCACTTATCACCATCATCATGGATGCTCCGCCGATTTTGCTGTCAGGCAACGCCTTACATTTCCCCCTCTACCGCCGCTTTTTCTACTCCTGCTGCTACTCTCACTCCTCCCAAGAAGAAAAAACTCGTCTTCATGGGTTCTCCCCCGGTCTCTGCTTCCGTTCTCGAGTCTCTTCTCGACGCATCCTCC...
1122 bp · TkA02G564430|TK1151|CDS
ATGCACCACTTATCACCATCATCATGGATGCTCCGCCGATTTTGCTGTCAGGCAACGCCTTACATTTCCCCCTCTACCGCCGCTTTTTCTACTCCTGCTGCTACTCTCACTCCTCCCAAGAAGAAAAAACTCGTCTTCATGGGTTCTCCCCCGGTCTCTGCTTCCGTTCTCGAGTCTCTTCTCGACGCATCCTCCGCCGCTGATTCCTTATTTGAGGTGGCAGCCATTGTAACTCAGCCACCTTCAGGAAGAGATAGGGG...
Protein
Download Protein FASTA373 aa · TkA02G564430|TK1151|PROTEIN
MHHLSPSSWMLRRFCCQATPYISPSTAAFSTPAATLTPPKKKKLVFMGSPPVSASVLESLLDASSAADSLFEVAAIVTQPPSGRDRGRKVMPSPVAQHALDRGFPADLIFTPVKAGEEAFLSNFTALEPELCITAAYGNILPTKFLKIPLLGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPIIAYEKMKIDDHIKAPELLDLLFAQGSKLLLQELPSIFDGSARKNAQEQDDSKATLAPKISQEE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G564430 |
|---|---|
| TK1151 ID | TkA02G564430 |
| OH-1004 ID | LXL04_012470 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 96.200 |
| Protein coverage (%) | TK1151 20.912 / OH-1004 40.206Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G564430 |
|---|---|
| Location | Chr02:145764100-145766683 (-) |
| Description | Similar to fmt: Methionyl-tRNA formyltransferase (Macrococcus caseolyticus (strain JCSC5402) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005829 cytosol Cellular Component GO:0004479 methionyl-tRNA formyltransferase activity Molecular Function |
| KEGG gene cross-reference | mcl:MCCL_0798 noc:Noc_3015 sus:Acid_2747 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00551Formyl_trans_N53-227 aaPF02911Formyl_trans_C255-364 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G564430 | PF00551 | Formyl_trans_N | 53 | 227 | 5.8e-33 | 114.9 |
| TkA02G564430 | PF02911 | Formyl_trans_C | 255 | 364 | 3.4e-15 | 56.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.