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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G559910
Reference: TK1151 Chr: Chr02 Coordinates: 144639852-144650996 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3856 bp · TkA02G559910|TK1151|cDNA

ACCCTTTCAAAATCTGTATGCTTGACTACCTTTATAAACGAATGTCGAATACGAATTCCCATTTTTCCATTATTACAGGATCCACGAATTCCCCTTAAAGAAACACACACTCTCTGTTTCATGGCAATCGAAGATAAAAATGTCAAATACGAAGAGGAATTCATTAAAAATTCAAAGGGTGTGAAGCTTTTTACGTGTAGATGGCTGCCAGCTGATTGCGAACCGAAAGCTTTAGTGTTTCTTAACCATGGGTATGCCAT...

CDS

Download CDS FASTA

1080 bp · TkA02G559910|TK1151|CDS

ACCCTTTCAAAATCTGTATGCTTGACTACCTTTATAAACGAATGTCGAATACGAATTCCCATTTTTCCATTATTACAGGATCCACGAATTCCCCTTAAAGAAACACACACTCTCTGTTTCATGGCAATCGAAGATAAAAATGTCAAATACGAAGAGGAATTCATTAAAAATTCAAAGGGTGTGAAGCTTTTTACGTGTAGATGGCTGCCAGCTGATTGCGAACCGAAAGCTTTAGTGTTTCTTAACCATGGGTATGCCAT...

Protein

Download Protein FASTA

359 aa · TkA02G559910|TK1151|PROTEIN

TLSKSVCLTTFINECRIRIPIFPLLQDPRIPLKETHTLCFMAIEDKNVKYEEEFIKNSKGVKLFTCRWLPADCEPKALVFLNHGYAMECSFSMKGPAMRLVKAKFGVYGIDCQGHGKSGGVLGFIPSFEDMVDDSSDFFTSICEKQENKNKLRILLGESMGGAMVLRLHMKKPEYWDGGVLVAPMCKLADNMKPSPIVVSILERLTSIIPTWKIIPGQDIIELAFRDPKIREEVRNNPLCYKGRVRLQTANTLLGVTTNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G559910
TK1151 IDTkA02G559910
OH-1004 IDLXL04_001149
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)54.200
Protein coverage (%)TK1151 79.109 / OH-1004 90.705
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G559910
LocationChr02:144639852-144650996 (+)
DescriptionSimilar to CSE: Caffeoylshikimate esterase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g52760 Esterase involved in the biosynthesis of lignin.
Acyl-CoA-binding protein 2 binds lysophospholipase 2 and lysoPC to promote tolerance to cadmium-induced oxidative stress in transgenic Arabidopsis.2010 · DOI: 10.1111/j.1365-313x.2010.04209.x
A bifunctional enzyme that has both monoacylglycerol acyltransferase and acyl hydrolase activities.2012 · DOI: 10.1104/pp.112.202135

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001149 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006629 lipid metabolic process Biological Process
GO:0006633 fatty acid biosynthetic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009809 lignin biosynthetic process Biological Process
GO:0009966 regulation of signal transduction Biological Process
GO:0010043 response to zinc ion Biological Process
GO:0016042 lipid catabolic process Biological Process
GO:0019369 arachidonate metabolic process Biological Process
GO:0019433 triglyceride catabolic process Biological Process
GO:0042542 response to hydrogen peroxide Biological Process
GO:0045471 response to ethanol Biological Process
GO:0045907 positive regulation of vasoconstriction Biological Process
KEGG gene cross-reference
ath:AT1G52760
hsa:11343
mmu:23945
msg:MSMEI_0213
msm:MSMEG_0220
rno:29254
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.365
Rank 1 · TkA02G559910 · TK1151
Endoplasmic reticulum0.353
Rank 2 · TkA02G559910 · TK1151
Cell membrane0.179
Rank 3 · TkA02G559910 · TK1151
Nucleus0.149
Rank 4 · TkA02G559910 · TK1151
Mitochondrion0.140
Rank 5 · TkA02G559910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00326Peptidase_S933-53 aa
PF12146Hydrolase_474-312 aa
PF12697Abhydrolase_679-310 aa
PF00561Abhydrolase_179-194 aa
PF02129Peptidase_S15111-306 aa
PF01738DLH143-177 aa
PF00756Esterase147-189 aa
PF02230Abhydrolase_2150-186 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G559910PF00326Peptidase_S933535.3e-0523.5
TkA02G559910PF12146Hydrolase_4743121.2e-62212.1
TkA02G559910PF12697Abhydrolase_6793105.3e-0834.5
TkA02G559910PF00561Abhydrolase_1791941.3e-0732.2
TkA02G559910PF02129Peptidase_S151113060.2511.7
TkA02G559910PF01738DLH1431770.2611.6
TkA02G559910PF00756Esterase1471890.1512.6
TkA02G559910PF02230Abhydrolase_21501860.0008120.0
TkA02G559910PF00326Peptidase_S91551925.3e-0523.5
TkA02G559910PF00561Abhydrolase_12583051.3e-0732.2
TkA02G559910PF02230Abhydrolase_22613160.0008120.0
TkA02G559910PF01738DLH2633120.2611.6
TkA02G559910PF00326Peptidase_S92653355.3e-0523.5
TkA02G559910PF02129Peptidase_S153233370.2511.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C942Arabidopsis thalianasp|Q9C942|CSE_ARATH Caffeoylshikimate esterase35.100%Swiss-ProtMedium

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