TkA02G547260 | RubberDandelionOmics

Gene overview

TkA02G547260

Reference: TK1151 Chr: Chr02 Coordinates: 141238103-141238817 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

405 bp · TkA02G547260|TK1151|cDNA

ATGGCTTCCCACTTTGGTAATGTTTTATCGATGCCATATGGAGGGAAAAAATCACAGGACCTGATGGAGATGACGATGAGCAATGTAGCTACAGAGGTTCATGAGTTCTTGCATACTGCCACGGGAAAAGACCATTTTCTGGAGCTGATAGACTGGGTGGAAGACCGACGGTCACAGCCACTGATATCAAAGGCGTTTGCCGGAACAGATATGATGTCGACTGCAGGTGTTGTTGGAGGAGCTGCTTCTTCTATTACACG...

CDS

Download CDS FASTA

405 bp · TkA02G547260|TK1151|CDS

ATGGCTTCCCACTTTGGTAATGTTTTATCGATGCCATATGGAGGGAAAAAATCACAGGACCTGATGGAGATGACGATGAGCAATGTAGCTACAGAGGTTCATGAGTTCTTGCATACTGCCACGGGAAAAGACCATTTTCTGGAGCTGATAGACTGGGTGGAAGACCGACGGTCACAGCCACTGATATCAAAGGCGTTTGCCGGAACAGATATGATGTCGACTGCAGGTGTTGTTGGAGGAGCTGCTTCTTCTATTACACG...

Protein

Download Protein FASTA

134 aa · TkA02G547260|TK1151|PROTEIN

MASHFGNVLSMPYGGKKSQDLMEMTMSNVATEVHEFLHTATGKDHFLELIDWVEDRRSQPLISKAFAGTDMMSTAGVVGGAASSITRVPTEVVKQRMQTWHFASDAVRFIVAKEGFKGPFAGYSSFCVILIEPL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G547260`
TK1151 ID	TkA02G547260
OH-1004 ID	LXL04_018254
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.400
Protein coverage (%)	TK1151 90.299 / OH-1004 80.220 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G547260

Location Chr02:141238103-141238817 (+)

Description Similar to SAMC1: S-adenosylmethionine carrier 1, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g34065`	Probable S-adenosylmethionine (SAM) transporter able to catalyze both uniport and exchange reactions through membranes.	No verified direct reference in this release
`At4g39460`	Transporter involved in exchange reactions through membranes.	Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization.2006 · DOI: 10.1104/pp.106.086975 Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development.2006 · DOI: 10.1105/tpc.105.040741

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018254 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009723 response to ethylene Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0015805 S-adenosyl-L-methionine transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ag:ABG75942

ath:AT1G34065

ath:AT4G39460

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.665

Rank 1 · TkA02G547260 · TK1151

Plastid0.173

Rank 2 · TkA02G547260 · TK1151

Cytoplasm0.079

Rank 3 · TkA02G547260 · TK1151

Nucleus0.036

Rank 4 · TkA02G547260 · TK1151

Peroxisome0.025

Rank 5 · TkA02G547260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458Transferase3-56 aa

PF00631G-gamma19-50 aa

PF00153Mito_carr74-125 aa

PF00631G-gamma97-109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G547260	`PF02458`	Transferase	3	56	1.4e-06	27.9
TkA02G547260	`PF00631`	G-gamma	19	50	0.26	12.0
TkA02G547260	`PF00153`	Mito_carr	74	125	2.5e-06	27.8
TkA02G547260	`PF00631`	G-gamma	97	109	0.26	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HT41`	Arabidopsis thaliana	sp\|F4HT41\|SAMC2_ARATH Probable S-adenosylmethionine carrier 2, chloroplastic	72.200%	Swiss-Prot	Low
`Q94AG6`	Arabidopsis thaliana	sp\|Q94AG6\|SAMC1_ARATH S-adenosylmethionine carrier 1, chloroplastic/mitochondrial	65.500%	Swiss-Prot	Low

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