TkA02G541130 | RubberDandelionOmics

Gene overview

TkA02G541130

Reference: TK1151 Chr: Chr02 Coordinates: 139615201-139618155 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2188 bp · TkA02G541130|TK1151|cDNA

CTTATTTTGCTTGCCAAGTAACTTTTAGGAGGATCTGTGAAAGATTTTTTTTTCTTCCCAAAAACAAATAATTTGACCTAAAGCAGGTGCGTATAGCAACGACGTTGATCGGTGCGATTGTCTACTTCTTGATATGCTCCGACCAATCGGCCGCGCGCTTCGACAGGTTACTTCTTCTTCGTGCCACAACCTCCATGTCGGGCGGCGGACCTGCTCCGGGACCTTCGTCAGTCCTTGCTGTTCATTCCGATACTACAATA...

CDS

Download CDS FASTA

1731 bp · TkA02G541130|TK1151|CDS

ATGCTCCGACCAATCGGCCGCGCGCTTCGACAGGTTACTTCTTCTTCGTGCCACAACCTCCATGTCGGGCGGCGGACCTGCTCCGGGACCTTCGTCAGTCCTTGCTGTTCATTCCGATACTACAATACAATCCCGAATCTATCGAACTTACAGCCAAACCTACGAACATGTTCCTCTCGTCGGTCACTTTGCTCAAGTTCTAAATTAAATAAATGTAGATACTTTACCACTGCCGCTTCAGCCTCCACCGCTGCCGTGGA...

Protein

Download Protein FASTA

576 aa · TkA02G541130|TK1151|PROTEIN

MLRPIGRALRQVTSSSCHNLHVGRRTCSGTFVSPCCSFRYYNTIPNLSNLQPNLRTCSSRRSLCSSSKLNKCRYFTTAASASTAAVEQLNYGRSNAIADTIDAYSAIELALDSVVKIFTVSSSPNYFLPWQNKSQRESMGSGFVISGKRIVTNAHVVADHTFVLVRKHGSPTKYRAEVKAVGHECDLAILVVESDEFWEGMKFLELGDIPFMQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGATQLLAIQIDAAIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G541130`
TK1151 ID	TkA02G541130
OH-1004 ID	LXL04_015206
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	49.300
Protein coverage (%)	TK1151 80.729 / OH-1004 84.201 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G541130

Location Chr02:139615201-139618155 (-)

Description Similar to DEGP9: Protease Do-like 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36950`	Probable serine protease.	No verified direct reference in this release
`At1g65640`	Putative serine protease.	No verified direct reference in this release
`At1g65630`	Putative serine protease.	No verified direct reference in this release
`At5g40560`	Putative serine protease.	No verified direct reference in this release
`At3g16540`	Putative serine protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015206 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0010206 photosystem II repair Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009533 chloroplast stromal thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G65630

ath:AT1G65640

ath:AT2G47940

ath:AT5G36950

ath:AT5G40200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.781

Rank 1 · TkA02G541130 · TK1151

Cytoplasm0.120

Rank 2 · TkA02G541130 · TK1151

Plastid0.114

Rank 3 · TkA02G541130 · TK1151

Nucleus0.060

Rank 4 · TkA02G541130 · TK1151

Peroxisome0.035

Rank 5 · TkA02G541130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18304SabA_adhesion63-120 aa

PF00089Trypsin122-299 aa

PF13365Trypsin_2140-269 aa

PF02122Peptidase_S39149-201 aa

PF02122Peptidase_S39260-298 aa

PF13180PDZ_2316-416 aa

PF00595PDZ335-372 aa

PF17820PDZ_6352-370 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G541130	`PF18304`	SabA_adhesion	63	120	0.083	12.9
TkA02G541130	`PF00089`	Trypsin	122	299	9.5e-18	65.5
TkA02G541130	`PF13365`	Trypsin_2	140	269	7.4e-21	76.1
TkA02G541130	`PF02122`	Peptidase_S39	149	201	0.26	11.6
TkA02G541130	`PF02122`	Peptidase_S39	260	298	0.26	11.6
TkA02G541130	`PF13180`	PDZ_2	316	416	8.8e-07	29.8
TkA02G541130	`PF00595`	PDZ	335	372	0.013	16.5
TkA02G541130	`PF17820`	PDZ_6	352	370	0.00015	22.1
TkA02G541130	`PF17815`	PDZ_3	423	567	1.4e-56	191.0
TkA02G541130	`PF00595`	PDZ	505	518	0.013	16.5
TkA02G541130	`PF17820`	PDZ_6	506	534	0.00015	22.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FIV6`	Arabidopsis thaliana	sp\|Q9FIV6\|DGP10_ARATH Protease Do-like 10, mitochondrial	69.600%	Swiss-Prot	High
`Q9SHZ0`	Arabidopsis thaliana	sp\|Q9SHZ0\|DEGP4_ARATH Protease Do-like 4, mitochondrial	60.300%	Swiss-Prot	High
`Q9SHZ1`	Arabidopsis thaliana	sp\|Q9SHZ1\|DEGP3_ARATH Putative protease Do-like 3, mitochondrial	61.000%	Swiss-Prot	High
`Q9FM41`	Arabidopsis thaliana	sp\|Q9FM41\|DGP13_ARATH Putative protease Do-like 13	55.400%	Swiss-Prot	High
`Q9LK71`	Arabidopsis thaliana	sp\|Q9LK71\|DGP11_ARATH Putative protease Do-like 11, mitochondrial	51.400%	Swiss-Prot	High

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