Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1762 bp · TkA02G540350|TK1151|cDNA
AAAAAAAGATGGTTTATTAAAATAAAAAGTCGTTTTATAAATTTAAAAAAAAAAAACATTTTTGGTCATAAAGAAGAAATCTCCAATTAGAGTATCTAAGTTGGTTTTTAATGCAATTAATAACAGATTCGATATTTGCTGACTGCTGTTTACGTATATTTAGAAAATAAATAAAAAAAGAAAGAAAAGAGCAACTGGAATATCACAACCACCCAACTCAGACCTCAAAGTTTGCATGCATGTATATATACATGATGTGT...
1080 bp · TkA02G540350|TK1151|CDS
ATGGTGACCAGAACGATAGATCTCCGGTCCGATACGGTGACGAAACCCACCGAAACAATGAGATTGGCTATGGCGAAGGCTGAGGTGGACGACGATGTTCTGATTTACGACCCGACGGCCCGACAACTCGAGACAGAAATGGCTCGAATTACAGGCAAAGAAGCCGCACTGTTTGTTCCTTCGGGGACCATGGGTAACCTCATAAGTGTTCTCGTTCACTGTGAAATCAGGGGAAGTGAAGTCATCCTTGGTAATAATTC...
Protein
Download Protein FASTA359 aa · TkA02G540350|TK1151|PROTEIN
MVTRTIDLRSDTVTKPTETMRLAMAKAEVDDDVLIYDPTARQLETEMARITGKEAALFVPSGTMGNLISVLVHCEIRGSEVILGNNSHIHIYENGGISTIGGVHPRPVKNNEDGTMDINLIESAIRNPDFEICYPKTRLICLENSHANSGGKCLSVEYTDQVGELAKKHNLKLHIDGARIFNASTALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARARILRKTLGGGMRQVGILCAAALVALQENVGKLA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G540350 |
|---|---|
| TK1151 ID | TkA02G540350 |
| OH-1004 ID | LXL04_012745 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 91.582Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G540350 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:139396766-139399634 (+) | |||||||||
| Description | Similar to THA1: Probable low-specificity L-threonine aldolase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006545 glycine biosynthetic process Biological Process GO:0006567 L-threonine catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004793 threonine aldolase activity Molecular Function GO:0008732 L-allo-threonine aldolase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ag:BAA20404 ath:AT1G08630 ath:AT3G04520 cel:CELE_R102.4 ece:Z1104 ecs:ECs_0956 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01212Beta_elim_lyase7-294 aaPF01041DegT_DnrJ_EryC124-178 aaPF01053Cys_Met_Meta_PP37-177 aaPF00282Pyridoxal_deC100-214 aaPF01041DegT_DnrJ_EryC1227-293 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G540350 | PF01212 | Beta_elim_lyase | 7 | 294 | 2.3e-107 | 359.4 |
| TkA02G540350 | PF01041 | DegT_DnrJ_EryC1 | 24 | 178 | 2.9e-05 | 24.2 |
| TkA02G540350 | PF01053 | Cys_Met_Meta_PP | 37 | 177 | 0.021 | 14.1 |
| TkA02G540350 | PF00282 | Pyridoxal_deC | 100 | 214 | 0.045 | 13.2 |
| TkA02G540350 | PF01041 | DegT_DnrJ_EryC1 | 227 | 293 | 2.9e-05 | 24.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.