TkA02G535800 | RubberDandelionOmics

Gene overview

TkA02G535800

Reference: TK1151 Chr: Chr02 Coordinates: 138166947-138170326 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2120 bp · TkA02G535800|TK1151|cDNA

CTAAATTGAGCATTACTCATTACAAAGCGTCCCCACTTGCAAATATTCTCTTAGCCCTCTCTATATACCACCATTTTTGTTCCTTTCAAGACTTCAAGTTTCACCCTTAATGGCTCCCCCCTCCATGCTTTTCTTGCTCCTTACCTTCTCATTACTCCTTACCCTCTTTAAATCGACTGATTCATCACCATTAGAGATTGAGGAGTTGTCATGGCTTGATGACAACACCGATGAGGAGATCAACATGGTCCAAGCTCGCC...

CDS

Download CDS FASTA

1149 bp · TkA02G535800|TK1151|CDS

ATGGCTCCCCCCTCCATGCTTTTCTTGCTCCTTACCTTCTCATTACTCCTTACCCTCTTTAAATCGACTGATTCATCACCATTAGAGATTGAGGAGTTGTCATGGCTTGATGACAACACCGATGAGGAGATCAACATGGTCCAAGCTCGCCATGATTCACTAAGAAAATGTGATTTTGTATCTGGAAAATGGGTATATGATCAAACGTATCCTCTCTATGATGCAGCCACATGCCCGTATCTTAGTACCAAAGTTACTTG...

Protein

Download Protein FASTA

382 aa · TkA02G535800|TK1151|PROTEIN

MAPPSMLFLLLTFSLLLTLFKSTDSSPLEIEELSWLDDNTDEEINMVQARHDSLRKCDFVSGKWVYDQTYPLYDAATCPYLSTKVTCQKNGRPDSDYEKWRWEPHGCNIPRFDALEFLGKMRRKRIMLVGDSIMRNQWESLVCLVESVVPKDRKTVTYAGPTIAFHALDFETSIEFCWAPLLVELKKGSGNKRILHLDLIEENAKYWRAADVLVFDSAHWWTHSDKWTSWDLLMDGNHVARDMNRMVAYQRGLRTWAKWV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G535800`
TK1151 ID	TkA02G535800
OH-1004 ID	LXL04_000636
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	42.200
Protein coverage (%)	TK1151 87.173 / OH-1004 78.959 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G535800

Location Chr02:138166947-138170326 (+)

Description Similar to PMR5: Protein PMR5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54260`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g30900`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g58600`	Required for nonhost resistance (NHR) during plant-microbe interactions.	Mutations in PMR5 result in powdery mildew resistance and altered cell wall composition.2004 · DOI: 10.1111/j.1365-313x.2004.02264.x AGB1 and PMR5 contribute to PEN2-mediated preinvasion resistance to Magnaporthe oryzae in Arabidopsis thaliana.2009 · DOI: 10.1094/mpmi-22-11-1331
`At1g29050`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g34070`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000636 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009620 response to fungus Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G29050

ath:AT2G30010

ath:AT2G31110

ath:AT2G34070

ath:AT5G58600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.508

Rank 1 · TkA02G535800 · TK1151

Extracellular0.109

Rank 2 · TkA02G535800 · TK1151

Cell membrane0.100

Rank 3 · TkA02G535800 · TK1151

Endoplasmic reticulum0.064

Rank 4 · TkA02G535800 · TK1151

Nucleus0.033

Rank 5 · TkA02G535800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N56-108 aa

PF24536NXPE4_C102-180 aa

PF13839PC-Esterase109-381 aa

PF14416PMR5N282-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G535800	`PF14416`	PMR5N	56	108	5.1e-23	81.9
TkA02G535800	`PF24536`	NXPE4_C	102	180	0.0007	20.0
TkA02G535800	`PF13839`	PC-Esterase	109	381	1.5e-84	285.0
TkA02G535800	`PF14416`	PMR5N	282	292	5.1e-23	81.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940H3`	Arabidopsis thaliana	sp\|Q940H3\|TBL36_ARATH Protein trichome birefringence-like 36	62.100%	Swiss-Prot	High
`Q6DR10`	Arabidopsis thaliana	sp\|Q6DR10\|TBL43_ARATH Protein trichome birefringence-like 43	43.800%	Swiss-Prot	Medium
`Q9LUZ6`	Arabidopsis thaliana	sp\|Q9LUZ6\|TBL44_ARATH Protein PMR5	43.400%	Swiss-Prot	Medium
`Q8VY22`	Arabidopsis thaliana	sp\|Q8VY22\|TBL38_ARATH Protein trichome birefringence-like 38	41.600%	Swiss-Prot	Medium
`O22960`	Arabidopsis thaliana	sp\|O22960\|TBL37_ARATH Protein trichome birefringence-like 37	41.000%	Swiss-Prot	Medium

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