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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G527700
Reference: TK1151 Chr: Chr02 Coordinates: 136094084-136096087 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1447 bp · TkA02G527700|TK1151|cDNA

GTATTGCATGGAGCCGTACCACCGCCGACATGCTTTTCTATACTACTTTCTAATTCTAATTCGTCGCTAGGGTTCCACCGCCGACGATCAAACTCTATTATTCTGATTTCTGCTGCTAAATCACATGTAATCGACGATCTGCTTGTTACGAAAATGAAGTTTGGAGCCACATTTACGGAGTATTTGCTAGGAGATAAATTGAGCTCGTTTGATTTGAACAAATGCTCTCATGTCGAATACAAGAGGCTCAAGAAGGTTCT...

CDS

Download CDS FASTA

1200 bp · TkA02G527700|TK1151|CDS

GTATTGCATGGAGCCGTACCACCGCCGACATGCTTTTCTATACTACTTTCTAATTCTAATTCGTCGCTAGGGTTCCACCGCCGACGATCAAACTCTATTATTCTGATTTCTGCTGCTAAATCACATGTAATCGACGATCTGCTTGTTACGAAAATGAAGTTTGGAGCCACATTTACGGAGTATTTGCTAGGAGATAAATTGAGCTCGTTTGATTTGAACAAATGCTCTCATGTCGAATACAAGAGGCTCAAGAAGGTTCT...

Protein

Download Protein FASTA

399 aa · TkA02G527700|TK1151|PROTEIN

VLHGAVPPPTCFSILLSNSNSSLGFHRRRSNSIILISAAKSHVIDDLLVTKMKFGATFTEYLLGDKLSSFDLNKCSHVEYKRLKKVLKICRHHCQGLNDANNGGSCSSEFRVIEDDRQKDRVSDICRYQSCQWCDRMFFSEIMKEASDIAGCFSSRARNLVQLHCTTGMQRYLLQWFRCFKNNQQALVLEGQMLIEYVIMNAIALRKILKKYDKVHKSSSGMNFKSKLQAEHLEISQSPWLIELVAFYMNFNESNEMICY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G527700
TK1151 IDTkA02G527700
OH-1004 IDLXL04_018885
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)42.200
Protein coverage (%)TK1151 87.218 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G527700
LocationChr02:136094084-136096087 (-)
DescriptionSimilar to BAH1: E3 ubiquitin-protein ligase BAH1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g38920 Probable E3 ubiquitin-protein ligase BAH1-like. No verified direct reference in this release
At1g02860 E3 ubiquitin-protein ligase that mediates E2-dependent protein ubiquitination.
BAH1/NLA, a RING-type ubiquitin E3 ligase, regulates the accumulation of salicylic acid and immune responses to Pseudomonas syringae DC3000.2008 · DOI: 10.1104/pp.108.124529

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XK56 Probable E3 ubiquitin-protein ligase BAH1-like 1. No verified direct reference in this release
Os03g0650900 Probable E3 ubiquitin-protein ligase BAH1-like 1. No verified direct reference in this release
UniProt: B8B5U8 Probable E3 ubiquitin-protein ligase BAH1-like 1. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009626 plant-type hypersensitive response Biological Process
GO:0009627 systemic acquired resistance Biological Process
GO:0009697 salicylic acid biosynthetic process Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0010167 response to nitrate Biological Process
GO:0010337 regulation of salicylic acid metabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0080021 response to benzoic acid Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G02860
dosa:Os03g0650900
dosa:Os07g0673200
osa:4333590
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.447
Rank 1 · TkA02G527700 · TK1151
Nucleus0.445
Rank 2 · TkA02G527700 · TK1151
Cell membrane0.157
Rank 3 · TkA02G527700 · TK1151
Lysosome / Vacuole0.067
Rank 4 · TkA02G527700 · TK1151
Endoplasmic reticulum0.065
Rank 5 · TkA02G527700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24921RING_XB3-XBAT3170-77 aa
PF03105SPX76-92 aa
PF13920zf-C3HC4_386-94 aa
PF00097zf-C3HC489-93 aa
PF14634zf-RING_593-93 aa
PF00097zf-C3HC4119-134 aa
PF24921RING_XB3-XBAT31126-134 aa
PF13920zf-C3HC4_3126-136 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G527700PF24921RING_XB3-XBAT3170773.4e-0524.5
TkA02G527700PF03105SPX76922.2e-0525.4
TkA02G527700PF13920zf-C3HC4_386940.0116.3
TkA02G527700PF00097zf-C3HC489930.0009919.6
TkA02G527700PF14634zf-RING_593930.0001922.0
TkA02G527700PF00097zf-C3HC41191340.0009919.6
TkA02G527700PF24921RING_XB3-XBAT311261343.4e-0524.5
TkA02G527700PF13920zf-C3HC4_31261360.0116.3
TkA02G527700PF15227zf-C3HC4_41261342.29.2
TkA02G527700PF03105SPX1942172.2e-0525.4
TkA02G527700PF14634zf-RING_52552680.0001922.0
TkA02G527700PF13445zf-RING_UBOX2582646.9e-0523.5
TkA02G527700PF13920zf-C3HC4_32933450.0116.3
TkA02G527700PF24921RING_XB3-XBAT312943463.4e-0524.5
TkA02G527700PF13445zf-RING_UBOX2953416.9e-0523.5
TkA02G527700PF14634zf-RING_52953440.0001922.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GW10Arabidopsis thalianasp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like52.700%Swiss-ProtHigh
Q9SRX9Arabidopsis thalianasp|Q9SRX9|NLA_ARATH E3 ubiquitin-protein ligase NLA40.500%Swiss-ProtMedium
A2XK56Oryza sativa subsp. indicasp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 152.100%Swiss-ProtHigh
Q7XZZ3Oryza sativa subsp. japonicasp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 152.100%Swiss-ProtHigh
B8B5U8Oryza sativa subsp. indicasp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 140.600%Swiss-ProtMedium

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