TkA02G525980 | RubberDandelionOmics

Gene overview

TkA02G525980

Reference: TK1151 Chr: Chr02 Coordinates: 135677101-135694585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2718 bp · TkA02G525980|TK1151|cDNA

TTTTATCGCAGGGACAAAAATATCTCTACGGAAGAAGAAGAGCCGTTTTCACCCTATCTAATCTCACCTGAGTTTTTGACCTAAGCAATACATATTAGTAATCTTCTCTCCAGACCCACTTTCATTACTTTATTCAGTAATCTTCAAAACCACCGATCGTTTCTTCTTTGTTGACTACGTACAGGAATTAGTCGTTCCGATTGGGGTTTGTTTACTTCCTGAAAAACAGCTGATTATGCTTATTTGATCATACAAGATAA...

CDS

Download CDS FASTA

1809 bp · TkA02G525980|TK1151|CDS

ATGGGGGATAGCGGTGGATTGAGCGCTAACAAGGTTACCGGACAAGAGGAAGAAGGAAATACTGCCCCTTTTCCTGATAGGGTTCAAGTAGGTGGATCACCACACTATAAGGTTGAAAGGAAGTTAGGAAAAGGTGGTTTTGGTCAGGTGTTTGTAGGTCGTAGAGTTACTGGTGGAACTGAACGCATATCAGGTCCAGGGGCCACTGAGGTAGCTCTGAAATTTGAGCACAAAAACAGCAAAGGCTGCAGTTATGGTCC...

Protein

Download Protein FASTA

602 aa · TkA02G525980|TK1151|PROTEIN

MGDSGGLSANKVTGQEEEGNTAPFPDRVQVGGSPHYKVERKLGKGGFGQVFVGRRVTGGTERISGPGATEVALKFEHKNSKGCSYGPPYEWQVYNTLGGSHGVPKVHYKGKQGEYYVMVMDMLGPSLWDVWNSSGQSMSSEMVSCIAVEALSILDKLHSRGYVHGDVKPENFLLGQPSTSQEKKLFLVDLGLATKWRETATGQHVDYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G525980`
TK1151 ID	TkA02G525980
OH-1004 ID	LXL04_012965
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 89.450 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G525980

Location Chr02:135677101-135694585 (-)

Description Similar to HD16: Casein kinase 1-like protein HD16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0793500`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.2013 · DOI: 10.1111/tpj.12268

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012965 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0030100 regulation of endocytosis Biological Process

GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0045104 intermediate filament cytoskeleton organization Biological Process

GO:0048586 regulation of long-day photoperiodism, flowering Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

cel:CELE_C03C10.1

dosa:Os03g0793500

spo:2541341

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.525

Rank 1 · TkA02G525980 · TK1151

Nucleus0.394

Rank 2 · TkA02G525980 · TK1151

Cell membrane0.135

Rank 3 · TkA02G525980 · TK1151

Mitochondrion0.107

Rank 4 · TkA02G525980 · TK1151

Endoplasmic reticulum0.077

Rank 5 · TkA02G525980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase36-271 aa

PF07714PK_Tyr_Ser-Thr37-307 aa

PF24289DUF747785-142 aa

PF03109ABC1103-199 aa

PF17667Pkinase_fungal141-246 aa

PF06293Kdo153-192 aa

PF24289DUF7477335-602 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G525980	`PF00069`	Pkinase	36	271	3.9e-17	63.2
TkA02G525980	`PF07714`	PK_Tyr_Ser-Thr	37	307	2.5e-07	31.0
TkA02G525980	`PF24289`	DUF7477	85	142	4.2e-162	538.3
TkA02G525980	`PF03109`	ABC1	103	199	0.013	15.4
TkA02G525980	`PF17667`	Pkinase_fungal	141	246	1.1e-08	35.0
TkA02G525980	`PF06293`	Kdo	153	192	0.0024	18.0
TkA02G525980	`PF24289`	DUF7477	335	602	4.2e-162	538.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q852L0`	Oryza sativa subsp. japonica	sp\|Q852L0\|HD16N_ORYSJ Casein kinase 1-like protein HD16	76.800%	Swiss-Prot	High

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