TkA02G515000 | RubberDandelionOmics

Gene overview

TkA02G515000

Reference: TK1151 Chr: Chr02 Coordinates: 132639270-132645068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1749 bp · TkA02G515000|TK1151|cDNA

ATGGAATGTCAAAGGGTCATGTTGGCTCATGATGCCATAGGAAGTGTTAGAATGAATGCTATTAGATGGATTCTTGATGGATTTTCATTAAAGGCCGGAGATATGTTTGTTTTACTTTCTGTTCTTCATCACATCCACCATCCTATGGGTTACAAAATTCGAGTAGATGGTTCGATGTTTGGAGGAGCAAACCAAAAGGCTATCGATGATGAAGTTGCTAGGAAGAAGATCGAGTATGCGAACAATTTGGAACTTGTTCA...

CDS

Download CDS FASTA

1749 bp · TkA02G515000|TK1151|CDS

ATGGAATGTCAAAGGGTCATGTTGGCTCATGATGCCATAGGAAGTGTTAGAATGAATGCTATTAGATGGATTCTTGATGGATTTTCATTAAAGGCCGGAGATATGTTTGTTTTACTTTCTGTTCTTCATCACATCCACCATCCTATGGGTTACAAAATTCGAGTAGATGGTTCGATGTTTGGAGGAGCAAACCAAAAGGCTATCGATGATGAAGTTGCTAGGAAGAAGATCGAGTATGCGAACAATTTGGAACTTGTTCA...

Protein

Download Protein FASTA

582 aa · TkA02G515000|TK1151|PROTEIN

MECQRVMLAHDAIGSVRMNAIRWILDGFSLKAGDMFVLLSVLHHIHHPMGYKIRVDGSMFGGANQKAIDDEVARKKIEYANNLELVQVSKLYEMQKITFKIEIVAGPIPKTVVEESKKIDATWVILDRRTKRDRKYFLEKLSCGVSRMKRNDDIVKVRGPKPSKTQSPRALLSYGDMLPVDHKVSTREAQNDEDLFSIEFDSSQAFGEERESSPEKTNANIVESPTTPKDTTRLDQKKCSTCSNTRPTSEWKIRSFPYSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G515000`
TK1151 ID	TkA02G515000
OH-1004 ID	LXL04_013133
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.300
Protein coverage (%)	TK1151 100.000 / OH-1004 42.443 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G515000

Location Chr02:132639270-132645068 (+)

Description Similar to TIC100: Protein TIC 100

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38560`	Could be involved in the negative regulation of root growth.	PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana.2015 · DOI: 10.1093/jxb/eru390
`At1g70460`	Negatively regulates root hair elongation.	No verified direct reference in this release
`At1g26150`	Could be involved in the negative regulation of root growth.	No verified direct reference in this release
`At5g07280`	Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities.	No verified direct reference in this release
`At1g23540`	Regulates the auxin-related MAX (More Axillary Growth) pathway during the shoot branching.	Over-expression of the IGI1 leading to altered shoot-branching development related to MAX pathway in Arabidopsis.2010 · DOI: 10.1007/s11103-010-9645-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013133 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006995 cellular response to nitrogen starvation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0032502 developmental process Biological Process

GO:0045037 protein import into chloroplast stroma Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT1G23540

ath:AT1G26150

ath:AT1G70460

ath:AT5G22640

ath:AT5G38560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.566

Rank 1 · TkA02G515000 · TK1151

Cytoplasm0.318

Rank 2 · TkA02G515000 · TK1151

Nucleus0.284

Rank 3 · TkA02G515000 · TK1151

Endoplasmic reticulum0.042

Rank 4 · TkA02G515000 · TK1151

Golgi apparatus0.029

Rank 5 · TkA02G515000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr274-520 aa

PF00069Pkinase288-520 aa

PF14531Kinase-like356-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G515000	`PF07714`	PK_Tyr_Ser-Thr	274	520	1e-33	117.5
TkA02G515000	`PF00069`	Pkinase	288	520	2.5e-33	116.3
TkA02G515000	`PF14531`	Kinase-like	356	461	0.027	14.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFW5`	Arabidopsis thaliana	sp\|Q9FFW5\|PERK8_ARATH Proline-rich receptor-like protein kinase PERK8	37.400%	Swiss-Prot	Low
`Q9CAL8`	Arabidopsis thaliana	sp\|Q9CAL8\|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13	38.100%	Swiss-Prot	Medium
`Q9C660`	Arabidopsis thaliana	sp\|Q9C660\|PEK10_ARATH Proline-rich receptor-like protein kinase PERK10	36.900%	Swiss-Prot	Medium
`Q9LYN8`	Arabidopsis thaliana	sp\|Q9LYN8\|EMS1_ARATH Leucine-rich repeat receptor protein kinase EMS1	39.900%	Swiss-Prot	Low
`Q9ZUE0`	Arabidopsis thaliana	sp\|Q9ZUE0\|PEK12_ARATH Proline-rich receptor-like protein kinase PERK12	36.800%	Swiss-Prot	Medium

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