TkA02G503570 | RubberDandelionOmics

Gene overview

TkA02G503570

Reference: TK1151 Chr: Chr02 Coordinates: 129138760-129141047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1410 bp · TkA02G503570|TK1151|cDNA

TTGATTTCATGTCTGAGATGATACGAAAATAACTTATTATCGTGGCAAATACCTGAATTTTGATTCATTTGCAAAAATTGATCGTATAGAAGATCAAACCTTGGTTCGTCATCTGCTGATTACTGCCAAAACCAATCGTGCCTTCTTCATTGTCAAGGTTGTTGCATCACTTCTTCATCAGATCATCTGACAAAATGTACGGATTCGAAGCTATGACCTTCAACATCCACGGTGGTTACCTCGAAGCAATTGTCAGGGGC...

CDS

Download CDS FASTA

1056 bp · TkA02G503570|TK1151|CDS

ATGTACGGATTCGAAGCTATGACCTTCAACATCCACGGTGGTTACCTCGAAGCAATTGTCAGGGGCCACAGATCTGGTTTATTGACCGCTGCTGATTACAACAATCTCTGCCAGTGCGAAACCCTCGATGACATCAAGATGCATCTCTCCGCCACCGAATACGGACCTTATCTTCAAAACGAACCTTCACCTCTGCATACAACCACAATTGTAGAAAAATGCACTCTTAAAATGGTTGATGAGTATAAGCACATGTTATG...

Protein

Download Protein FASTA

351 aa · TkA02G503570|TK1151|PROTEIN

MYGFEAMTFNIHGGYLEAIVRGHRSGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKMVDEYKHMLCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYQFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRRKLYSSFGLLYPYGHEELAVCED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G503570`
TK1151 ID	TkA02G503570
OH-1004 ID	LXL04_013348
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G503570

Location Chr02:129138760-129141047 (+)

Description Similar to VHA-d2: V-type proton ATPase subunit d2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28715`	Subunit of the integral membrane V0 complex of vacuolar ATPase.	No verified direct reference in this release
`At3g28710`	Subunit of the integral membrane V0 complex of vacuolar ATPase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0587000`	Subunit of the integral membrane V0 complex of vacuolar ATPase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013348 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006879 intracellular iron ion homeostasis Biological Process

GO:0007034 vacuolar transport Biological Process

GO:0007035 vacuolar acidification Biological Process

GO:0036295 cellular response to increased oxygen levels Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT3G28710

ath:AT3G28715

ddi:DDB_G0273071

ddi:DDB_G0273657

dme:Dmel_CG2934

dosa:Os01g0587000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.751

Rank 1 · TkA02G503570 · TK1151

Nucleus0.268

Rank 2 · TkA02G503570 · TK1151

Cell membrane0.112

Rank 3 · TkA02G503570 · TK1151

Lysosome / Vacuole0.064

Rank 4 · TkA02G503570 · TK1151

Mitochondrion0.054

Rank 5 · TkA02G503570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01992vATP-synt_AC3916-344 aa

PF20309DRHyd-ASK86-103 aa

PF20309DRHyd-ASK278-294 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G503570	`PF01992`	vATP-synt_AC39	16	344	2.6e-107	359.9
TkA02G503570	`PF20309`	DRHyd-ASK	86	103	0.14	12.8
TkA02G503570	`PF20309`	DRHyd-ASK	278	294	0.14	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHA4`	Arabidopsis thaliana	sp\|Q9LHA4\|VA0D2_ARATH V-type proton ATPase subunit d2	92.600%	Swiss-Prot	High
`Q9LJI5`	Arabidopsis thaliana	sp\|Q9LJI5\|VA0D1_ARATH V-type proton ATPase subunit d1	92.300%	Swiss-Prot	High
`Q8RU33`	Oryza sativa subsp. japonica	sp\|Q8RU33\|VA0D_ORYSJ Probable V-type proton ATPase subunit d	91.700%	Swiss-Prot	High

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