TkA02G499520 | RubberDandelionOmics

Gene overview

TkA02G499520

Reference: TK1151 Chr: Chr02 Coordinates: 127994887-127997206 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1906 bp · TkA02G499520|TK1151|cDNA

AAAAAATGATGAGTCAGCAAAGGTTTGCTAAAACTGCGAATCAAAAAGAGCGATGAGAGAGAAAGTTTAAGAGAGAGAAAATCTCAAGAGCCACATACACAACTTGTGGCTCTCCTTTCTTCTTGCCTTGCTAACGTGGCGGTACGATCAAAACCAACAAAGCCTACTCGACGACGGCGACGACGAAATCACACACACCCAAAAGATCCGCACCCTCTTTGTTTGTCAGAGACAATAGATCTGCTCCTTTTATCCAACCA...

CDS

Download CDS FASTA

1437 bp · TkA02G499520|TK1151|CDS

ATGTCGGAGGGAAAAGATCCGGCTATTAAGTTGTTTGGCAAGACGATTCAGCTACCTGACGGAGCTTTTAGTCAGGAAGTTCTATCAGGCGATGGCGGCGGTGGTGAAGATGCTGCTTGTGTTAAGAGTGAAGATCGGTCGTCTTCTTCTAGCTCATCGTCTGAAGTTGGGGAAGAACGTGAATCGGATGATAATAATAATAAGGATCTACCAGAGGAGAAATCCACCGATAAATATACGAACATAGCCCAATCTACAAA...

Protein

Download Protein FASTA

478 aa · TkA02G499520|TK1151|PROTEIN

MSEGKDPAIKLFGKTIQLPDGAFSQEVLSGDGGGGEDAACVKSEDRSSSSSSSSEVGEERESDDNNNKDLPEEKSTDKYTNIAQSTNSEEKPDPNPTTSMLTDNNSNTKTPSHENESPTAKPSKSEEEQSDTSNNQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTSASQYRQITVTDSSLPIELNHHTTVLNNPNATVLTFGSDTNNSNTPLCESMASVLKIAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G499520`
TK1151 ID	TkA02G499520
OH-1004 ID	LXL04_021057
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	39.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G499520

Location Chr02:127994887-127997206 (-)

Description Similar to CDF2: Cyclic dof factor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39660`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.2009 · DOI: 10.1016/j.devcel.2009.06.015
`At3g47500`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	No verified direct reference in this release
`At5g62430`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g69570`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	No verified direct reference in this release
`At1g26790`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021057 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G69570

ath:AT3G47500

ath:AT5G39660

ath:AT5G62430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.909

Rank 1 · TkA02G499520 · TK1151

Cytoplasm0.213

Rank 2 · TkA02G499520 · TK1151

Mitochondrion0.028

Rank 3 · TkA02G499520 · TK1151

Cell membrane0.024

Rank 4 · TkA02G499520 · TK1151

Endoplasmic reticulum0.011

Rank 5 · TkA02G499520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09731Mitofilin14-165 aa

PF28211GlpR28-134 aa

PF23451Zn_ribbon_PaaD135-178 aa

PF02591Zn_ribbon_9139-154 aa

PF02701Zn_ribbon_Dof145-201 aa

PF02591Zn_ribbon_9172-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G499520	`PF09731`	Mitofilin	14	165	0.12	12.0
TkA02G499520	`PF28211`	GlpR	28	134	2.6	8.7
TkA02G499520	`PF23451`	Zn_ribbon_PaaD	135	178	0.038	14.4
TkA02G499520	`PF02591`	Zn_ribbon_9	139	154	1.1	10.2
TkA02G499520	`PF02701`	Zn_ribbon_Dof	145	201	2.4e-33	114.8
TkA02G499520	`PF02591`	Zn_ribbon_9	172	180	1.1	10.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZL5`	Arabidopsis thaliana	sp\|Q93ZL5\|CDF2_ARATH Cyclic dof factor 2	48.200%	Swiss-Prot	Medium
`Q8LFV3`	Arabidopsis thaliana	sp\|Q8LFV3\|CDF3_ARATH Cyclic dof factor 3	41.500%	Swiss-Prot	Medium
`Q8W1E3`	Arabidopsis thaliana	sp\|Q8W1E3\|CDF1_ARATH Cyclic dof factor 1	42.700%	Swiss-Prot	Medium
`Q9SEZ3`	Arabidopsis thaliana	sp\|Q9SEZ3\|CDF5_ARATH Cyclic dof factor 5	36.200%	Swiss-Prot	Medium
`Q9LQX4`	Arabidopsis thaliana	sp\|Q9LQX4\|DOF13_ARATH Dof zinc finger protein DOF1.3	35.400%	Swiss-Prot	Medium

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