TkA02G494040 | RubberDandelionOmics

Gene overview

TkA02G494040

Reference: TK1151 Chr: Chr02 Coordinates: 126463904-126464785 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · TkA02G494040|TK1151|cDNA

ATGTCGTGGTTTTTGGTTTATAGATATCGTTCGCGTAAAATTAAAAGAATATTGGCACGTAACGAGTCTTCTTTTGAGTTCACGGATCTTTTACACATGAAGAAAAGGTCAAAAGTTGAAGGGTTTGAACCGCAAATGAAGAACAATCAAGATAAGTTGCTTCCGGGGGTTTCAGGGTATTTAAGCAAACCGATTATGTACGATAGAAAGGAGATCATGGAAGCAACTATGAACTTCAGTGAAAGGTACAGAATTGGAGG...

CDS

Download CDS FASTA

807 bp · TkA02G494040|TK1151|CDS

ATGTCGTGGTTTTTGGTTTATAGATATCGTTCGCGTAAAATTAAAAGAATATTGGCACGTAACGAGTCTTCTTTTGAGTTCACGGATCTTTTACACATGAAGAAAAGGTCAAAAGTTGAAGGGTTTGAACCGCAAATGAAGAACAATCAAGATAAGTTGCTTCCGGGGGTTTCAGGGTATTTAAGCAAACCGATTATGTACGATAGAAAGGAGATCATGGAAGCAACTATGAACTTCAGTGAAAGGTACAGAATTGGAGG...

Protein

Download Protein FASTA

268 aa · TkA02G494040|TK1151|PROTEIN

MSWFLVYRYRSRKIKRILARNESSFEFTDLLHMKKRSKVEGFEPQMKNNQDKLLPGVSGYLSKPIMYDRKEIMEATMNFSERYRIGGCVYKAVIQGRIVAVKKFRDATEELKILQRYADNGSLDKWLFPLSSSSSGGSVVFLTWSQRLNLALDIANGLQYMHEHSQPSIAHRDLRTSNILLDSNFKAKIANFSAARPAISSIMLKVDVFAFGVILMELLSGKKAMETRDDGEICMSWKEIKKILEVEERERGEIEVVDGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G494040`
TK1151 ID	TkA02G494040
OH-1004 ID	LXL04_013481
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.800
Protein coverage (%)	TK1151 92.537 / OH-1004 44.535 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G494040

Location Chr02:126463904-126464785 (+)

Description Similar to NFP: Serine/threonine receptor-like kinase NFP

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g33580`	May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.	No verified direct reference in this release
`At2g23770`	Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity.	LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis.2012 · DOI: 10.1104/pp.112.201699
`At3g21630`	Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity toward both biotic and abiotic stresses (e.g. tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection).	CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis.2007 · DOI: 10.1073/pnas.0705147104 AvrPtoB targets the LysM receptor kinase CERK1 to promote bacterial virulence on plants.2009 · DOI: 10.1016/j.cub.2009.01.054 The lysin motif receptor-like kinase (LysM-RLK) CERK1 is a major chitin-binding protein in Arabidopsis thaliana and subject to chitin-induced phosphorylation.2010 · DOI: 10.1074/jbc.m110.116657 Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection.2011 · DOI: 10.1073/pnas.1112862108 The LysM receptor-like kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by overexpression of fungal chitinases in Arabidopsis plants.2012 · DOI: 10.1093/mp/sss021 Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants.2012 · DOI: 10.1093/pcp/pcs113 Selective regulation of the chitin-induced defense response by the Arabidopsis receptor-like cytoplasmic kinase PBL27.2014 · DOI: 10.1111/tpj.12535

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013481 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002752 cell surface pattern recognition receptor signaling pathway Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009877 nodulation Biological Process

GO:0010200 response to chitin Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0032499 detection of peptidoglycan Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT2G23770

ath:AT2G33580

ath:AT3G21630

mtr:11410973

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.643

Rank 1 · TkA02G494040 · TK1151

Nucleus0.256

Rank 2 · TkA02G494040 · TK1151

Cytoplasm0.252

Rank 3 · TkA02G494040 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA02G494040 · TK1151

Golgi apparatus0.029

Rank 5 · TkA02G494040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29511DUF85577-48 aa

PF07714PK_Tyr_Ser-Thr97-196 aa

PF00069Pkinase97-197 aa

PF12330Haspin_kinase144-198 aa

PF24476DUF7580147-251 aa

PF07714PK_Tyr_Ser-Thr203-239 aa

PF00069Pkinase205-247 aa

PF29511DUF8557238-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G494040	`PF29511`	DUF8557	7	48	0.15	13.4
TkA02G494040	`PF07714`	PK_Tyr_Ser-Thr	97	196	9.7e-16	58.6
TkA02G494040	`PF00069`	Pkinase	97	197	1.3e-15	58.3
TkA02G494040	`PF12330`	Haspin_kinase	144	198	0.089	12.5
TkA02G494040	`PF24476`	DUF7580	147	251	0.085	13.2
TkA02G494040	`PF07714`	PK_Tyr_Ser-Thr	203	239	9.7e-16	58.6
TkA02G494040	`PF00069`	Pkinase	205	247	1.3e-15	58.3
TkA02G494040	`PF29511`	DUF8557	238	251	0.15	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22808`	Arabidopsis thaliana	sp\|O22808\|LYK5_ARATH Protein LYK5	31.400%	Swiss-Prot	Medium
`O64825`	Arabidopsis thaliana	sp\|O64825\|LYK4_ARATH LysM domain receptor-like kinase 4	29.700%	Swiss-Prot	Low
`A8R7E6`	Arabidopsis thaliana	sp\|A8R7E6\|CERK1_ARATH Chitin elicitor receptor kinase 1	32.300%	Swiss-Prot	Medium

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