TkA02G478870 | RubberDandelionOmics

Gene overview

TkA02G478870

Reference: TK1151 Chr: Chr02 Coordinates: 122217244-122217933 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

591 bp · TkA02G478870|TK1151|cDNA

GCGGATATCCGAAAATTCGGATATCCGAAATCCGGATATCCGAACTTTCGGAAACTGTATATTACTATCCGAATACGAATCCGAAATTTCGGATATCCGATATTTCAGATATCCGAAATTTCAGATTCGTATTCGGATAGTAACATACAATATCCGAAAATGAAAACCAACATAAGCTACTTCCCACTATTATTAACAACGGTGAAACCTTCATCTCCATCTGCATCTGCAACTCACGTGACCGAAAGAGACACCACCAA...

CDS

Download CDS FASTA

591 bp · TkA02G478870|TK1151|CDS

GCGGATATCCGAAAATTCGGATATCCGAAATCCGGATATCCGAACTTTCGGAAACTGTATATTACTATCCGAATACGAATCCGAAATTTCGGATATCCGATATTTCAGATATCCGAAATTTCAGATTCGTATTCGGATAGTAACATACAATATCCGAAAATGAAAACCAACATAAGCTACTTCCCACTATTATTAACAACGGTGAAACCTTCATCTCCATCTGCATCTGCAACTCACGTGACCGAAAGAGACACCACCAA...

Protein

Download Protein FASTA

196 aa · TkA02G478870|TK1151|PROTEIN

ADIRKFGYPKSGYPNFRKLYITIRIRIRNFGYPIFQISEISDSYSDSNIQYPKMKTNISYFPLLLTTVKPSSPSASATHVTERDTTKEAKYTGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAAVAASFAAAPTSTLPRFRWLLASRTPFLHRYHHLHRLLSCRILLYPSFQVAICSKLALPTGNDS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G478870`
TK1151 ID	TkA02G478870
OH-1004 ID	LXL04_027788
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.000
Protein coverage (%)	TK1151 34.184 / OH-1004 33.668 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G478870

Location Chr02:122217244-122217933 (+)

Description Similar to ERF017: Ethylene-responsive transcription factor ERF017

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74930`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g19210`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g21960`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g31060`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At3g50260`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027788 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009611 response to wounding Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G01250

ath:AT1G19210

ath:AT1G74930

ath:AT4G31060

ath:AT5G21960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.781

Rank 1 · TkA02G478870 · TK1151

Cytoplasm0.188

Rank 2 · TkA02G478870 · TK1151

Plastid0.050

Rank 3 · TkA02G478870 · TK1151

Endoplasmic reticulum0.048

Rank 4 · TkA02G478870 · TK1151

Cell membrane0.042

Rank 5 · TkA02G478870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP217-29 aa

PF00847AP290-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G478870	`PF00847`	AP2	17	29	1e-09	39.2
TkA02G478870	`PF00847`	AP2	90	133	1e-09	39.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7L5`	Arabidopsis thaliana	sp\|Q9S7L5\|ERF18_ARATH Ethylene-responsive transcription factor ERF018	82.700%	Swiss-Prot	Low
`Q84QC2`	Arabidopsis thaliana	sp\|Q84QC2\|ERF17_ARATH Ethylene-responsive transcription factor ERF017	89.400%	Swiss-Prot	Low
`Q9C591`	Arabidopsis thaliana	sp\|Q9C591\|ERF16_ARATH Ethylene-responsive transcription factor ERF016	88.900%	Swiss-Prot	Low
`Q6NLD5`	Arabidopsis thaliana	sp\|Q6NLD5\|ERF15_ARATH Ethylene-responsive transcription factor ERF015	60.000%	Swiss-Prot	Low
`Q9SNE1`	Arabidopsis thaliana	sp\|Q9SNE1\|ERF11_ARATH Ethylene-responsive transcription factor ERF011	58.300%	Swiss-Prot	Low

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