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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G474830
Reference: TK1151 Chr: Chr02 Coordinates: 121205063-121206803 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1126 bp · TkA02G474830|TK1151|cDNA

CCCTTTCTAATCCTCGAAAAAGAAACATGTCTAGCATCCTTATGGAGACTAAAATCCTACGACTCCCTAAAACTCCACCTACCCAAAAAATATTGCCAACTCCCTCACTACCCCTTCCCCAACAATTTCCCAAAATACCCCTCGAAACAACAGTTCATTACCTACCTCGATTCCTACGCGAAACATTTCTCTATCCGTCCGATGTTTGGGTACGAGGTTAAGAGCGCGGAGTATGATGTTGATAGTTGTCTGTGGAGGGT...

CDS

Download CDS FASTA

1098 bp · TkA02G474830|TK1151|CDS

CCCTTTCTAATCCTCGAAAAAGAAACATGTCTAGCATCCTTATGGAGACTAAAATCCTACGACTCCCTAAAACTCCACCTACCCAAAAAATATTGCCAACTCCCTCACTACCCCTTCCCCAACAATTTCCCAAAATACCCCTCGAAACAACAGTTCATTACCTACCTCGATTCCTACGCGAAACATTTCTCTATCCGTCCGATGTTTGGGTACGAGGTTAAGAGCGCGGAGTATGATGTTGATAGTTGTCTGTGGAGGGT...

Protein

Download Protein FASTA

365 aa · TkA02G474830|TK1151|PROTEIN

PFLILEKETCLASLWRLKSYDSLKLHLPKKYCQLPHYPFPNNFPKYPSKQQFITYLDSYAKHFSIRPMFGYEVKSAEYDVDSCLWRVVGNGTEFVSRWLVVATGDNADPVVPEFDGFEKFGGKVMHSFEYKNGGEFREKKVLVVGCGNSGMEIGLNLCCNGARVSLVVRHKLHILPRDILGRSSFAVAVGLLKLFPLRFVDWVLTVYSRLALGDTSRVGIVRPKDGPLKIKGKTGKTPVLDVGVLSKIKSGQIKVVGEIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G474830
TK1151 IDTkA02G474830
OH-1004 IDLXL04_025866
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)54.400
Protein coverage (%)TK1151 98.904 / OH-1004 85.480
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G474830
LocationChr02:121205063-121206803 (-)
DescriptionSimilar to YUC6: Indole-3-pyruvate monooxygenase YUCCA6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g33230 Involved in auxin biosynthesis.
Activation of a flavin monooxygenase gene YUCCA7 enhances drought resistance in Arabidopsis.2012 · DOI: 10.1007/s00425-011-1552-3
At4g13260 Involved in auxin biosynthesis.
Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis.2006 · DOI: 10.1101/gad.1415106
At1g04610 Involved in auxin biosynthesis. No verified direct reference in this release
At5g25620 Involved in auxin biosynthesis via the indole-3-pyruvic acid (IPA) pathway.
Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis.2006 · DOI: 10.1101/gad.1415106
yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes.2007 · DOI: 10.1104/pp.107.104935
Overexpression of Arabidopsis YUCCA6 in potato results in high-auxin developmental phenotypes and enhanced resistance to water deficit.2013 · DOI: 10.1093/mp/sss100
The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase.2013 · DOI: 10.1074/jbc.m112.424077
At1g04180 Involved in auxin biosynthesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025866 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006979 response to oxidative stress Biological Process
GO:0009635 response to herbicide Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009819 drought recovery Biological Process
GO:0009851 auxin biosynthetic process Biological Process
GO:0010038 response to metal ion Biological Process
GO:0010262 somatic embryogenesis Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G04180
ath:AT1G04610
ath:AT4G13260
ath:AT5G11320
ath:AT5G25620
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.269
Rank 1 · TkA02G474830 · TK1151
Peroxisome0.239
Rank 2 · TkA02G474830 · TK1151
Mitochondrion0.164
Rank 3 · TkA02G474830 · TK1151
Endoplasmic reticulum0.158
Rank 4 · TkA02G474830 · TK1151
Nucleus0.115
Rank 5 · TkA02G474830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00743FMO-like20-289 aa
PF13434Lys_Orn_oxgnase37-166 aa
PF13738Pyr_redox_344-171 aa
PF07992Pyr_redox_287-169 aa
PF02789Peptidase_M17_N119-150 aa
PF13241NAD_binding_7136-170 aa
PF00070Pyr_redox140-171 aa
PF01134GIDA140-171 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G474830PF00743FMO-like202891.4e-2590.5
TkA02G474830PF13434Lys_Orn_oxgnase371662e-1350.9
TkA02G474830PF13738Pyr_redox_3441718.2e-2175.3
TkA02G474830PF07992Pyr_redox_2871691.4e-0938.6
TkA02G474830PF02789Peptidase_M17_N1191502.28.9
TkA02G474830PF13241NAD_binding_71361700.1913.0
TkA02G474830PF00070Pyr_redox1401710.008517.3
TkA02G474830PF01134GIDA1401710.05113.4
TkA02G474830PF01494FAD_binding_31401710.2511.2
TkA02G474830PF02558ApbA1411740.2411.7
TkA02G474830PF02789Peptidase_M17_N2292572.28.9
TkA02G474830PF13738Pyr_redox_32482968.2e-2175.3
TkA02G474830PF07992Pyr_redox_22602911.4e-0938.6
TkA02G474830PF01134GIDA2673490.05113.4
TkA02G474830PF13241NAD_binding_72682850.1913.0
TkA02G474830PF13434Lys_Orn_oxgnase2712872e-1350.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49312Arabidopsis thalianasp|O49312|YUC7_ARATH Probable indole-3-pyruvate monooxygenase YUCCA752.700%Swiss-ProtHigh
Q9SVQ1Arabidopsis thalianasp|Q9SVQ1|YUC2_ARATH Indole-3-pyruvate monooxygenase YUCCA254.800%Swiss-ProtHigh
O23024Arabidopsis thalianasp|O23024|YUC3_ARATH Probable indole-3-pyruvate monooxygenase YUCCA352.200%Swiss-ProtHigh
Q8VZ59Arabidopsis thalianasp|Q8VZ59|YUC6_ARATH Indole-3-pyruvate monooxygenase YUCCA653.800%Swiss-ProtHigh
O64489Arabidopsis thalianasp|O64489|YUC9_ARATH Probable indole-3-pyruvate monooxygenase YUCCA950.100%Swiss-ProtHigh

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