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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G472460
Reference: TK1151 Chr: Chr02 Coordinates: 120562713-120565621 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2809 bp · TkA02G472460|TK1151|cDNA

AGTTTCTTGGAAGAAGACCATACTTTAAGACTCCGTCCATGTTCGAAGTAAACGAAGTCAACTCACTCTTATCAGCACACACACTATAAAACTCCCCCACTCATACCCACAATAAACGCCAACTCTTGCTTCAATCTCCTTACCAACGTCCCTAAATCCTAACCCTTGATTTCCGAAATGTCTTCGTCAACCGAATCCAAAATCGCCATGGCCAAAACAGTCGTTTCCACCGTCGGTTCAGTCGCCGCGGCGGCAATGGT...

CDS

Download CDS FASTA

1524 bp · TkA02G472460|TK1151|CDS

ATGTCTTCGTCAACCGAATCCAAAATCGCCATGGCCAAAACAGTCGTTTCCACCGTCGGTTCAGTCGCCGCGGCGGCAATGGTGGCTCGCAGCGTCGCACGCGATTACTTGCCTTCAGAATTCCAGGACTACCTCTATTATAGCTTCAGAAATTTCATCTACAAATTCTCCACACACTTAACCATGGTTATTTACGAATTCGACGGATTTCTAGAAAACGAGATTTACACCGCTGCACAGCTTTACCTTGCCGCCCGAAG...

Protein

Download Protein FASTA

507 aa · TkA02G472460|TK1151|PROTEIN

MSSSTESKIAMAKTVVSTVGSVAAAAMVARSVARDYLPSEFQDYLYYSFRNFIYKFSTHLTMVIYEFDGFLENEIYTAAQLYLAARSSLEINRMQITKNASQKNITVAMETNEEFIDVYNGVKFKWNLVSNKTTTREYYRNDAMVTGSARSDTRMLELTFHRKHKDFALNTYMPFILNDSKTRKREDKSVKLFTVDPMMMHSGVPTVWSPVNLDHPSNFATLAMDTDVKEKVMKDLDRFIQRREYYRKVGKAWKRGYLLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G472460
TK1151 IDTkA02G472460
OH-1004 IDLXL04_013772
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)81.100
Protein coverage (%)TK1151 91.716 / OH-1004 47.154
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G472460
LocationChr02:120562713-120565621 (-)
DescriptionSimilar to HSR4: Protein HYPER-SENSITIVITY-RELATED 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g50930 Protein HYPER-SENSITIVITY-RELATED 4. No verified direct reference in this release
At3g50940 AAA-ATPase At3g50940. No verified direct reference in this release
At2g18193 AAA-ATPase At2g18193. No verified direct reference in this release
At2g18190 AAA-ATPase At2g18190. No verified direct reference in this release
At5g17760 AAA-ATPase At5g17760. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013772 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0006950 response to stress Biological Process
GO:0009411 response to UV Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009863 salicylic acid mediated signaling pathway Biological Process
GO:0012501 programmed cell death Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005740 mitochondrial envelope Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
KEGG gene cross-reference
ath:AT3G50930
ath:AT3G50940
ath:AT5G17760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.333
Rank 1 · TkA02G472460 · TK1151
Nucleus0.279
Rank 2 · TkA02G472460 · TK1151
Mitochondrion0.166
Rank 3 · TkA02G472460 · TK1151
Plastid0.119
Rank 4 · TkA02G472460 · TK1151
Cell membrane0.070
Rank 5 · TkA02G472460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12775AAA_76-31 aa
PF14363AAA_assoc37-129 aa
PF07728AAA_582-111 aa
PF00910RNA_helicase101-122 aa
PF13476AAA_23111-244 aa
PF05673DUF815208-314 aa
PF25568AAA_lid_At3g28540220-245 aa
PF01429MBD241-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G472460PF12775AAA_76310.1112.7
TkA02G472460PF14363AAA_assoc371294.9e-2382.1
TkA02G472460PF07728AAA_5821110.001719.1
TkA02G472460PF00910RNA_helicase1011220.02915.6
TkA02G472460PF13476AAA_231112440.02316.1
TkA02G472460PF05673DUF8152083140.0004220.3
TkA02G472460PF25568AAA_lid_At3g285402202451.7e-2486.3
TkA02G472460PF01429MBD2412810.212.0
TkA02G472460PF13191AAA_162462790.0002422.4
TkA02G472460PF24883NPHP3_N2542980.05114.5
TkA02G472460PF12775AAA_72542840.1112.7
TkA02G472460PF13555AAA_292552770.005717.1
TkA02G472460PF00004AAA2573961.1e-1971.8
TkA02G472460PF13086AAA_112573050.0002421.7
TkA02G472460PF05496RuvB_N2573150.0005420.5
TkA02G472460PF13479AAA_242572820.001319.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZG2Arabidopsis thalianasp|Q8VZG2|HSR4_ARATH Protein HYPER-SENSITIVITY-RELATED 456.700%Swiss-ProtHigh
Q147F9Arabidopsis thalianasp|Q147F9|AATPC_ARATH AAA-ATPase At3g5094053.600%Swiss-ProtHigh
Q8GW96Arabidopsis thalianasp|Q8GW96|AATP3_ARATH AAA-ATPase At2g1819348.200%Swiss-ProtMedium
F4IQG2Arabidopsis thalianasp|F4IQG2|AATP2_ARATH AAA-ATPase At2g1819046.700%Swiss-ProtMedium
Q9FN75Arabidopsis thalianasp|Q9FN75|AATPI_ARATH AAA-ATPase At5g1776045.700%Swiss-ProtMedium

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