TkA02G471510 | RubberDandelionOmics

Gene overview

TkA02G471510

Reference: TK1151 Chr: Chr02 Coordinates: 120298618-120300518 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

854 bp · TkA02G471510|TK1151|cDNA

CACCGCATCAATACAAATATACAATCAAAAAGACAATCTCGACTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCATCGCCACCGGCTCTGTGACTCGCTTCGCCATTCTCCACCGTCATGACCGGCTCCTCCACTTCTTCTCGCAAGGTTTTGAGCAAGATAGCTACCAATAGAATTCAAAAGGAGCTGGTAGAGTGGCAGGTCAATCCTCCTTCTGGATTTGTACATAGAGTCACCGACAATCTT...

CDS

Download CDS FASTA

486 bp · TkA02G471510|TK1151|CDS

ATGACCGGCTCCTCCACTTCTTCTCGCAAGGTTTTGAGCAAGATAGCTACCAATAGAATTCAAAAGGAGCTGGTAGAGTGGCAGGTCAATCCTCCTTCTGGATTTGTACATAGAGTCACCGACAATCTTCAAAGGTGGGTGATTGAAGTGTATGGAGCGCAAGGTACAATTTATGCTGATGAAAAGTATCAAGTCCAAGTTGATTTTCCTGAGAATTATCCTATGGAAGCACCTCAGGTGATATTTTTGCATCCAGCTCC...

Protein

Download Protein FASTA

161 aa · TkA02G471510|TK1151|PROTEIN

MTGSSTSSRKVLSKIATNRIQKELVEWQVNPPSGFVHRVTDNLQRWVIEVYGAQGTIYADEKYQVQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKERPEDNDRYVRNCRNGRSPKETRWWFHDDKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G471510`
TK1151 ID	TkA02G471510
OH-1004 ID	LXL04_007213
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G471510

Location Chr02:120298618-120300518 (+)

Description Similar to UBC16: Probable ubiquitin-conjugating enzyme E2 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75440`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At5g42990`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g45050`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	Functional expression and molecular characterization of AtUBC2-1, a novel ubiquitin-conjugating enzyme (E2) from Arabidopsis thaliana.1993 · DOI: 10.1007/bf00029013
`At4g36410`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0004842 ubiquitin-protein transferase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0061631 ubiquitin conjugating enzyme activity Molecular Function

KEGG gene cross-reference

ath:AT1G45050

ath:AT1G75440

ath:AT4G36410

ath:AT5G42990

ddi:DDB_G0268938

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582

Rank 1 · TkA02G471510 · TK1151

Nucleus0.574

Rank 2 · TkA02G471510 · TK1151

Cell membrane0.075

Rank 3 · TkA02G471510 · TK1151

Endoplasmic reticulum0.068

Rank 4 · TkA02G471510 · TK1151

Golgi apparatus0.057

Rank 5 · TkA02G471510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00179UQ_con19-154 aa

PF14462Prok-E2_E39-86 aa

PF05773RWD60-89 aa

PF08694UFC161-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G471510	`PF00179`	UQ_con	19	154	8.6e-38	129.8
TkA02G471510	`PF14462`	Prok-E2_E	39	86	0.16	12.5
TkA02G471510	`PF05773`	RWD	60	89	0.0046	17.8
TkA02G471510	`PF08694`	UFC1	61	105	0.0042	17.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FWT2`	Arabidopsis thaliana	sp\|Q9FWT2\|UBC16_ARATH Probable ubiquitin-conjugating enzyme E2 16	83.200%	Swiss-Prot	High
`Q9FMM0`	Arabidopsis thaliana	sp\|Q9FMM0\|UBC18_ARATH Probable ubiquitin-conjugating enzyme E2 18	82.600%	Swiss-Prot	High
`P42743`	Arabidopsis thaliana	sp\|P42743\|UBC15_ARATH Ubiquitin-conjugating enzyme 15	79.500%	Swiss-Prot	High
`O23239`	Arabidopsis thaliana	sp\|O23239\|UBC17_ARATH Probable ubiquitin-conjugating enzyme E2 17	77.000%	Swiss-Prot	High

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