TkA02G466000 | RubberDandelionOmics

Gene overview

TkA02G466000

Reference: TK1151 Chr: Chr02 Coordinates: 118805673-118807804 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1665 bp · TkA02G466000|TK1151|cDNA

CAACAAATCAACGGCAAAAATAAGAAATCCTTTGATTTTCTCAGTCCAGCTACGAATTACGATCATGAAGACACGAACACCCGAACACGATATCAAGCTCCGTCTCGCGTCTCGTCAGTCTCGGCCTCTCATGTCGATTCTCGTTGCCGATTAATCAAGACGCCTCTGTGCGTGTATCTCGGCCTCTTCGATCTCTTTGCACTTGCTGACTCACCTCTCCACCTCGCAAATTTCAAATTGACAAAGAAAGTAAAAAATGC...

CDS

Download CDS FASTA

1182 bp · TkA02G466000|TK1151|CDS

ATGCTGCAAAACGTACCTCATCAGATGATACAATCTCCCGCCAGGTTAGGACTCCCAAACCCTAATTCACCTTCCTTACAAACACCCGCCCCTCCAAAATTCAGCTCACAAATCCCCCAATCACACCCACCTAATAACCTCCACCCAAATCTCCAAACTACCCCCACCTCCCTGACCCTCCTCCCCCTCCTCCCACCCCTCCAAAGAGCCCAATCCATCCTCATCAGAATGTCTTCCCTCTCCACCAAACTCTTCCAAGT...

Protein

Download Protein FASTA

393 aa · TkA02G466000|TK1151|PROTEIN

MLQNVPHQMIQSPARLGLPNPNSPSLQTPAPPKFSSQIPQSHPPNNLHPNLQTTPTSLTLLPLLPPLQRAQSILIRMSSLSTKLFQVSPNHTQWLSTFRGSFPTFLSTQSQPPTDSIPSSTKDILALFTSLQSQLYESVTQLQQILDLQDAKQKLTREIRSKDSAILAFANKLKESERVLDMLVDDYSDYQRLKRAKVEENEEDSNTTTVATRLNLSDILSYAHRISYTTFAPPEFGAGTAPLRGALPPAPQEEQMRASQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G466000`
TK1151 ID	TkA02G466000
OH-1004 ID	LXL04_013894
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 80.662 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G466000

Location Chr02:118805673-118807804 (+)

Description Similar to MED4: Mediator of RNA polymerase II transcription subunit 4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02850`	Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013894 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0005634 nucleus Cellular Component

GO:0016592 mediator complex Cellular Component

GO:0070847 core mediator complex Cellular Component

GO:0003712 transcription coregulator activity Molecular Function

KEGG gene cross-reference

ath:AT5G02850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.770

Rank 1 · TkA02G466000 · TK1151

Cytoplasm0.400

Rank 2 · TkA02G466000 · TK1151

Mitochondrion0.029

Rank 3 · TkA02G466000 · TK1151

Cell membrane0.019

Rank 4 · TkA02G466000 · TK1151

Endoplasmic reticulum0.018

Rank 5 · TkA02G466000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10018Med4124-261 aa

PF30935ZC2HC1C_CC132-180 aa

PF21928XLF_CC142-176 aa

PF104171-cysPrx_C302-315 aa

PF104171-cysPrx_C326-340 aa

PF21928XLF_CC337-352 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G466000	`PF10018`	Med4	124	261	5.5e-11	43.2
TkA02G466000	`PF30935`	ZC2HC1C_CC	132	180	0.083	13.6
TkA02G466000	`PF21928`	XLF_CC	142	176	6.8	7.4
TkA02G466000	`PF10417`	1-cysPrx_C	302	315	0.00034	21.2
TkA02G466000	`PF10417`	1-cysPrx_C	326	340	0.00034	21.2
TkA02G466000	`PF21928`	XLF_CC	337	352	6.8	7.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZ00`	Arabidopsis thaliana	sp\|Q9LZ00\|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4	55.300%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card