TkA02G460460 | RubberDandelionOmics

Gene overview

TkA02G460460

Reference: TK1151 Chr: Chr02 Coordinates: 117322740-117324004 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

534 bp · TkA02G460460|TK1151|cDNA

ATGATGAAGCAGAACGTGTGGCAGCACATGAGGTATGTGATCATGAAATGGTCAGGACATGACAAGTTTCACAATAAAAAAGAAGTAATGGCAGTTATGACAGTTGAAAAAGCTATGAGTATCGAATCTTTGAAGACACCTGCTACAGCCACACGAACGGTTTTAGGAGAACCAGGGAGTGGAGGTTCATCAACACTGTCAGTGGTTGGTGCTGTGAAAAAATGGGAAAAGTCTGACCCAGAAAAGTCAACAGAAACATG...

CDS

Download CDS FASTA

534 bp · TkA02G460460|TK1151|CDS

ATGATGAAGCAGAACGTGTGGCAGCACATGAGGTATGTGATCATGAAATGGTCAGGACATGACAAGTTTCACAATAAAAAAGAAGTAATGGCAGTTATGACAGTTGAAAAAGCTATGAGTATCGAATCTTTGAAGACACCTGCTACAGCCACACGAACGGTTTTAGGAGAACCAGGGAGTGGAGGTTCATCAACACTGTCAGTGGTTGGTGCTGTGAAAAAATGGGAAAAGTCTGACCCAGAAAAGTCAACAGAAACATG...

Protein

Download Protein FASTA

177 aa · TkA02G460460|TK1151|PROTEIN

MMKQNVWQHMRYVIMKWSGHDKFHNKKEVMAVMTVEKAMSIESLKTPATATRTVLGEPGSGGSSTLSVVGAVKKWEKSDPEKSTETWNKLSDANCEHEKQLSLLSKLAEENWDSYKTVVDSCSVLKSQKWEGQFSKTWDVEIVKALLGARDAMLKIRSHMRQMGEAAGIPCLTVAYS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G460460`
TK1151 ID	TkA02G460460
OH-1004 ID	LXL04_036403
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	87.600
Protein coverage (%)	TK1151 96.045 / OH-1004 59.105 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G460460

Location Chr02:117322740-117324004 (+)

Description Similar to PMK: Phosphomevalonate kinase, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31910`	Phosphomevalonate kinase, peroxisomal.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036403 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0016126 sterol biosynthetic process Biological Process

GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0004631 phosphomevalonate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G31910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.467

Rank 1 · TkA02G460460 · TK1151

Nucleus0.279

Rank 2 · TkA02G460460 · TK1151

Mitochondrion0.209

Rank 3 · TkA02G460460 · TK1151

Cell membrane0.153

Rank 4 · TkA02G460460 · TK1151

Endoplasmic reticulum0.084

Rank 5 · TkA02G460460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25795TPR_XPO794-155 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G460460	`PF25795`	TPR_XPO7	94	155	0.052	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6T1`	Arabidopsis thaliana	sp\|Q9C6T1\|PMK_ARATH Phosphomevalonate kinase, peroxisomal	61.200%	Swiss-Prot	Medium

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