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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G453300
Reference: TK1151 Chr: Chr02 Coordinates: 115405494-115406562 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

402 bp · TkA02G453300|TK1151|cDNA

CTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATATATATATATATATATATATATATATAATTTTTTTTAATGTTATATATGATCATGTTCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGGGCGGTTCAAATGAGAACGATTATCGGAG...

CDS

Download CDS FASTA

402 bp · TkA02G453300|TK1151|CDS

CTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATATATATATATATATATATATATATATAATTTTTTTTAATGTTATATATGATCATGTTCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGGGCGGTTCAAATGAGAACGATTATCGGAG...

Protein

Download Protein FASTA

133 aa · TkA02G453300|TK1151|PROTEIN

LYIYIYIYIYIYIYIYIYIYIYIYIYIIYIYIYIYIYIIFFNVIYDHVPIYIYIYIYIYIYIYIYIYIYIYIYIYIEGGSNENDYRRGERRNESKPLIPVCRKSIFCRRSAAVCPTYVITCDSYMNSHVILYT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G453300
TK1151 IDTkA02G453300
OH-1004 IDLXL04_012228
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)96.500
Protein coverage (%)TK1151 42.857 / OH-1004 13.225
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G453300
LocationChr02:115405494-115406562 (+)
DescriptionSimilar to At3g11180: Probable 2-oxoglutarate-dependent dioxygenase At3g111800
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012228 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002229 defense response to oomycetes Biological Process
GO:0006952 defense response Biological Process
GO:0009813 flavonoid biosynthetic process Biological Process
GO:0097237 cellular response to toxic substance Biological Process
GO:1900150 regulation of defense response to fungus Biological Process
GO:1900366 negative regulation of defense response to insect Biological Process
GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005506 iron ion binding Molecular Function
GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function
GO:0031418 L-ascorbic acid binding Molecular Function
KEGG gene cross-reference
ath:AT2G38240
ath:AT3G11180
ath:AT3G55970
ath:AT5G05600
dosa:Os10g0536400
osa:4349238
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.324
Rank 1 · TkA02G453300 · TK1151
Cytoplasm0.282
Rank 2 · TkA02G453300 · TK1151
Extracellular0.234
Rank 3 · TkA02G453300 · TK1151
Cell membrane0.056
Rank 4 · TkA02G453300 · TK1151
Lysosome / Vacuole0.051
Rank 5 · TkA02G453300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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