TkA02G448940 | RubberDandelionOmics

Gene overview

TkA02G448940

Reference: TK1151 Chr: Chr02 Coordinates: 114192057-114193875 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

706 bp · TkA02G448940|TK1151|cDNA

TTTGTTTCTTCGTTTTTGGAAGAAGAATTTCCCTTACAGGCTGCAACAAATCCGAGCACATCAATTACCTCGTGATGGGTGCTACTGAGGACGAGGATGCACAGGCAGAAAGAGCTCGAGCAATGGGATTAACCGTTGGAATAGCTCCCTCATTTAGAAGCGCTGAACGTGCCGAGAAACGTAGGGAGTACTATATGAAGCTGGAGCAAAAGCAACGAGCTTTGGAGGCAGAAAAGATAGAATCCGAAAGGAGGGCCAGG...

CDS

Download CDS FASTA

441 bp · TkA02G448940|TK1151|CDS

ATGGGTGCTACTGAGGACGAGGATGCACAGGCAGAAAGAGCTCGAGCAATGGGATTAACCGTTGGAATAGCTCCCTCATTTAGAAGCGCTGAACGTGCCGAGAAACGTAGGGAGTACTATATGAAGCTGGAGCAAAAGCAACGAGCTTTGGAGGCAGAAAAGATAGAATCCGAAAGGAGGGCCAGGGAGGAAGAAGAAGCCGCTTTAAAGGAATTCCGGAGGAGCTTAGTTGTTAAAGCACATCCTGTTCCAAGTTTTTA...

Protein

Download Protein FASTA

146 aa · TkA02G448940|TK1151|PROTEIN

MGATEDEDAQAERARAMGLTVGIAPSFRSAERAEKRREYYMKLEQKQRALEAEKIESERRAREEEEAALKEFRRSLVVKAHPVPSFYRDGPPPKVEPKKMPVTRARSPNLTRGRSCIESTQASLEEKGSSSRIRGRSVTPNSVRNK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G448940`
TK1151 ID	TkA02G448940
OH-1004 ID	LXL04_016011
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	56.900
Protein coverage (%)	TK1151 79.452 / OH-1004 43.939 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G448940

Location Chr02:114192057-114193875 (-)

Description Similar to WDL2: Protein WVD2-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g28646`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis.2003 · DOI: 10.1104/pp.015966 WVD2 is a novel microtubule-associated protein in Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2006.03015.x
`At1g54460`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	No verified direct reference in this release
`At3g23090`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	Light-regulated hypocotyl elongation involves proteasome-dependent degradation of the microtubule regulatory protein WDL3 in Arabidopsis.2013 · DOI: 10.1105/tpc.113.112789
`At3g04630`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis.2003 · DOI: 10.1104/pp.015966 WVD2 is a novel microtubule-associated protein in Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2006.03015.x
`At2g35880`	Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016011 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0001578 microtubule bundle formation Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0010031 circumnutation Biological Process

GO:0010091 trichome branching Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051511 negative regulation of unidimensional cell growth Biological Process

GO:0072657 protein localization to membrane Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G54460

ath:AT2G35880

ath:AT3G04630

ath:AT3G23090

ath:AT5G28646

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.695

Rank 1 · TkA02G448940 · TK1151

Nucleus0.246

Rank 2 · TkA02G448940 · TK1151

Cell membrane0.195

Rank 3 · TkA02G448940 · TK1151

Mitochondrion0.033

Rank 4 · TkA02G448940 · TK1151

Golgi apparatus0.030

Rank 5 · TkA02G448940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06886TPX226-97 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G448940	`PF06886`	TPX2	26	97	3.5e-22	78.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84ZT9`	Arabidopsis thaliana	sp\|Q84ZT9\|WVD2_ARATH Protein WAVE-DAMPENED 2	56.100%	Swiss-Prot	High
`Q9ASW8`	Arabidopsis thaliana	sp\|Q9ASW8\|WDL2_ARATH Protein WVD2-like 2	50.900%	Swiss-Prot	High
`Q84WL6`	Arabidopsis thaliana	sp\|Q84WL6\|WDL3_ARATH Protein WVD2-like 3	62.000%	Swiss-Prot	Medium
`Q8GYX9`	Arabidopsis thaliana	sp\|Q8GYX9\|WDL1_ARATH Protein WVD2-like 1	61.400%	Swiss-Prot	Medium
`Q9SJ62`	Arabidopsis thaliana	sp\|Q9SJ62\|WDL4_ARATH Protein WVD2-like 4	51.500%	Swiss-Prot	Medium

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