TkA02G448920 | RubberDandelionOmics

Gene overview

TkA02G448920

Reference: TK1151 Chr: Chr02 Coordinates: 114187832-114189261 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

780 bp · TkA02G448920|TK1151|cDNA

ATGTATGTACATGTCTGCATTGCATACATAAACAATCTCTCTCACACGTATTTCTTCAGTTTCGATCCCCTCGACATTTGGTTCTTCTTTTTTCAAGGACGACCGCGAGAAGAATATCAAAACTGCTCTACCAGAATAGATAAGAAGAGGAATGTAGATGTCACCTGCACCGACGCCGCCTCCGTTCCTGCACAACCATTTTCCAATGCCCTAATTAACTCCGTCGAGACTTTCATCTTCGATTGTGATGGAGTCATTTG...

CDS

Download CDS FASTA

780 bp · TkA02G448920|TK1151|CDS

ATGTATGTACATGTCTGCATTGCATACATAAACAATCTCTCTCACACGTATTTCTTCAGTTTCGATCCCCTCGACATTTGGTTCTTCTTTTTTCAAGGACGACCGCGAGAAGAATATCAAAACTGCTCTACCAGAATAGATAAGAAGAGGAATGTAGATGTCACCTGCACCGACGCCGCCTCCGTTCCTGCACAACCATTTTCCAATGCCCTAATTAACTCCGTCGAGACTTTCATCTTCGATTGTGATGGAGTCATTTG...

Protein

Download Protein FASTA

259 aa · TkA02G448920|TK1151|PROTEIN

MYVHVCIAYINNLSHTYFFSFDPLDIWFFFFQGRPREEYQNCSTRIDKKRNVDVTCTDAASVPAQPFSNALINSVETFIFDCDGVIWKGDSLIEGVPETLELLRSKGKRLVFVTNNSIKSRKQYGKKFETLGLSVNEEEIFASSFAAAYLQPINFPKDKKIYVIGEEGILIELGQAGFSYLGAQEDGGKKIELKPRFLMEHDKDVGAVVVGFDRYFNYYNVQYGTLCVRENPGCLFLATNRDVVTHLTDAQEWASLNFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G448920`
TK1151 ID	TkA02G448920
OH-1004 ID	LXL04_012501
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	90.200
Protein coverage (%)	TK1151 86.486 / OH-1004 78.731 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G448920

Location Chr02:114187832-114189261 (-)

Description Similar to PGLP1B: Phosphoglycolate phosphatase 1B, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36700`	Photorespiratory enzyme that dephosphorylates the 2- phosphoglycolate produced by the RuBisCO oxygenation reaction.	Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.2007 · DOI: 10.1104/pp.107.099192
`At5g36790`	Photorespiratory enzyme that dephosphorylates the 2-phosphoglycolate produced by the RuBisCO oxygenation reaction.	No verified direct reference in this release
`At5g47760`	Dephosphorylates 2-phosphoglycolate, but does not contribute to photorespiratory metabolism.	Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.2007 · DOI: 10.1104/pp.107.099192

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012501 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009853 photorespiration Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0008967 phosphoglycolate phosphatase activity Molecular Function

GO:0016791 phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G36700

ath:AT5G36790

ath:AT5G47760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.331

Rank 1 · TkA02G448920 · TK1151

Mitochondrion0.205

Rank 2 · TkA02G448920 · TK1151

Plastid0.155

Rank 3 · TkA02G448920 · TK1151

Nucleus0.151

Rank 4 · TkA02G448920 · TK1151

Endoplasmic reticulum0.117

Rank 5 · TkA02G448920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00702Hydrolase76-243 aa

PF13344Hydrolase_678-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G448920	`PF00702`	Hydrolase	76	243	8.2e-05	23.8
TkA02G448920	`PF13344`	Hydrolase_6	78	178	5.3e-31	107.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0DKC3`	Arabidopsis thaliana	sp\|P0DKC3\|PGP1A_ARATH Phosphoglycolate phosphatase 1A, chloroplastic	81.700%	Swiss-Prot	High
`P0DKC4`	Arabidopsis thaliana	sp\|P0DKC4\|PGP1B_ARATH Phosphoglycolate phosphatase 1B, chloroplastic	81.700%	Swiss-Prot	High
`Q8GWU0`	Arabidopsis thaliana	sp\|Q8GWU0\|PGP2_ARATH Phosphoglycolate phosphatase 2	67.200%	Swiss-Prot	High

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