Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3546 bp · TkA02G448800|TK1151|cDNA
CTGATGATCACAGAGATGATGGCTTCTTCTGCTACAATGGCCGCGAGTAATAAGTTAATTAATGTGAATGCAAGTAACGGTGATTATAAGGTATGGGAAGATCCATCCTTCATTAAGTGGAGGAAGAGGGATTCTCATGTTTCGCTCCATTGCCATGATTCCGTGGAAGGTTCTTTGAAATACTGGTATGAACGAAACAAAGTGGATGTTCTTGTATCAAAATCAGCAATTTGGGATGATGATGCTGTTTCGGGATCAAT...
3303 bp · TkA02G448800|TK1151|CDS
ATGATCACAGAGATGATGGCTTCTTCTGCTACAATGGCCGCGAGTAATAAGTTAATTAATGTGAATGCAAGTAACGGTGATTATAAGGTATGGGAAGATCCATCCTTCATTAAGTGGAGGAAGAGGGATTCTCATGTTTCGCTCCATTGCCATGATTCCGTGGAAGGTTCTTTGAAATACTGGTATGAACGAAACAAAGTGGATGTTCTTGTATCAAAATCAGCAATTTGGGATGATGATGCTGTTTCGGGATCAATTGA...
Protein
Download Protein FASTA1100 aa · TkA02G448800|TK1151|PROTEIN
MITEMMASSATMAASNKLINVNASNGDYKVWEDPSFIKWRKRDSHVSLHCHDSVEGSLKYWYERNKVDVLVSKSAIWDDDAVSGSIECAKCWVQDLPFVKSLSGYWKFFLAQSPATTPPNFHDTVFQDSTWESIPVPSNWQMHGFDRPIYTNIIYPFPLDPPHVPDDNPTGCYRTYFHLPKEWEGRRILLHFEAVDSAFHVWINGAPVGYSQDSRLPAEFEITEFCHECGSDKKNVVAVQVYRWSDGSYLEDQDHWWLSG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G448800 |
|---|---|
| TK1151 ID | TkA02G448800 |
| OH-1004 ID | LXL04_014179 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.200 |
| Protein coverage (%) | TK1151 98.545 / OH-1004 92.888Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G448800 |
|---|---|
| Location | Chr02:114148136-114154732 (-) |
| Description | Similar to lacZ: Beta-galactosidase (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005990 lactose catabolic process Biological Process GO:0009341 beta-galactosidase complex Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0004565 beta-galactosidase activity Molecular Function GO:0030246 carbohydrate binding Molecular Function |
| KEGG gene cross-reference | ppr:PBPRB0034 vco:VC0395_A1917 vcr:VC395_2453 vvu:VV2_1327 vvy:VVA0165 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02837Glyco_hydro_2_N99-271 aaPF22666Glyco_hydro_2_N2173-242 aaPF00703Glyco_hydro_2273-390 aaPF02836Glyco_hydro_2_C396-678 aaPF16353LacZ_4685-778 aaPF22666Glyco_hydro_2_N2787-813 aaPF02837Glyco_hydro_2_N788-819 aaPF02929Bgal_small_N811-1083 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G448800 | PF02837 | Glyco_hydro_2_N | 99 | 271 | 3.2e-55 | 187.4 |
| TkA02G448800 | PF22666 | Glyco_hydro_2_N2 | 173 | 242 | 4.7e-06 | 27.5 |
| TkA02G448800 | PF00703 | Glyco_hydro_2 | 273 | 390 | 8.1e-18 | 65.9 |
| TkA02G448800 | PF02836 | Glyco_hydro_2_C | 396 | 678 | 1.1e-98 | 330.8 |
| TkA02G448800 | PF16353 | LacZ_4 | 685 | 778 | 1.6e-17 | 64.2 |
| TkA02G448800 | PF22666 | Glyco_hydro_2_N2 | 787 | 813 | 4.7e-06 | 27.5 |
| TkA02G448800 | PF02837 | Glyco_hydro_2_N | 788 | 819 | 3.2e-55 | 187.4 |
| TkA02G448800 | PF02929 | Bgal_small_N | 811 | 1083 | 4.4e-75 | 253.3 |
| TkA02G448800 | PF00703 | Glyco_hydro_2 | 887 | 907 | 8.1e-18 | 65.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.