TkA02G446670 | RubberDandelionOmics

Gene overview

TkA02G446670

Reference: TK1151 Chr: Chr02 Coordinates: 113545285-113547196 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · TkA02G446670|TK1151|cDNA

CTTTTCGATGCAAACCCTCGCAATGAAACTCACCATAGTCTTGCTGCTTTATAACTTCGCTCTCTTGATTTCATCGTCCTCAGCTTTTCAATCGGACGAGCTTATTGTAGACGATGAACATTTTGATTTCGGAGAGCGCCCTTCCCATGAAGTCGTATCATCATCGTCACCCTCGATTTCTTCTTCCCATTCTCCTCCAAACTCAATTCGAAAGACGTCTGCGGAGCCTGATTCGGACTCGAGAGTTCAGTTCGCCCTGG...

CDS

Download CDS FASTA

906 bp · TkA02G446670|TK1151|CDS

ATGCAAACCCTCGCAATGAAACTCACCATAGTCTTGCTGCTTTATAACTTCGCTCTCTTGATTTCATCGTCCTCAGCTTTTCAATCGGACGAGCTTATTGTAGACGATGAACATTTTGATTTCGGAGAGCGCCCTTCCCATGAAGTCGTATCATCATCGTCACCCTCGATTTCTTCTTCCCATTCTCCTCCAAACTCAATTCGAAAGACGTCTGCGGAGCCTGATTCGGACTCGAGAGTTCAGTTCGCCCTGGAACACGC...

Protein

Download Protein FASTA

301 aa · TkA02G446670|TK1151|PROTEIN

MQTLAMKLTIVLLLYNFALLISSSSAFQSDELIVDDEHFDFGERPSHEVVSSSSPSISSSHSPPNSIRKTSAEPDSDSRVQFALEHAFGDSEDFSVAGTFTARLKSHGGKRTLTKIRFSRNDLSTIEKEKFKKLLEDDDFYRIRVPSNVLNPPGKAYVISSVKARCLPNDGLDEHFIVHMEGVHILAVNYGSQRACQHNRPLKFPSKWTFNSHTVLKYSEYAPRTPIFSEHILGGDMGEEEGVKPLERSFLAKYWMYFMP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G446670`
TK1151 ID	TkA02G446670
OH-1004 ID	LXL04_014228
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G446670`
Location	Chr02:113545285-113547196 (-)
Description	Similar to emc10: ER membrane protein complex subunit 10
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014228` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence Biological Process GO:0071816 tail-anchored membrane protein insertion into ER membrane Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0072546 EMC complex Cellular Component
KEGG gene cross-reference	dre:565829 xla:100049769 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.809

Rank 1 · TkA02G446670 · TK1151

Golgi apparatus0.128

Rank 2 · TkA02G446670 · TK1151

Nucleus0.122

Rank 3 · TkA02G446670 · TK1151

Cytoplasm0.089

Rank 4 · TkA02G446670 · TK1151

Cell membrane0.040

Rank 5 · TkA02G446670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08601PAP135-83 aa

PF21203ECM1053-62 aa

PF21203ECM10239-264 aa

PF26858Phage_T7_1_5256-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G446670	`PF08601`	PAP1	35	83	0.3	11.5
TkA02G446670	`PF21203`	ECM10	53	62	2.5e-05	25.9
TkA02G446670	`PF21203`	ECM10	239	264	2.5e-05	25.9
TkA02G446670	`PF26858`	Phage_T7_1_5	256	266	0.36	11.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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