TkA02G441280 | RubberDandelionOmics

Gene overview

TkA02G441280

Reference: TK1151 Chr: Chr02 Coordinates: 112175562-112177902 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1473 bp · TkA02G441280|TK1151|cDNA

GTTAAAAGTGAAACCGAACCCAAAGTGCCTTATCATCATCTTCATCGTATATATGGCTACTCCGGATAGAACACACAAAACATAAGGCAACGAAAACCAGATGATGGCGTCCTCCTCTGCTTCTACTTCTGCTACTCTCACTCTATCATCGATTCATCTTCCTCAAGAACCAAAATCATCCCTTATCTCCTCCTTCTCTTTCAAACCAAACCCCAAAACCAAGACTCTTGTTCTACAGTCTCAATCAGAATGCACCAGAC...

CDS

Download CDS FASTA

1062 bp · TkA02G441280|TK1151|CDS

ATGATGGCGTCCTCCTCTGCTTCTACTTCTGCTACTCTCACTCTATCATCGATTCATCTTCCTCAAGAACCAAAATCATCCCTTATCTCCTCCTTCTCTTTCAAACCAAACCCCAAAACCAAGACTCTTGTTCTACAGTCTCAATCAGAATGCACCAGACCCACGAATTTGAAGTCCAGTTTTGGTAGTTTTACTTCTTCCAAAAATTCTCCATTTTTGGTTTCTGCAGTGGCTGCTGAAGCTGATTTGGGCGAAGTTGT...

Protein

Download Protein FASTA

353 aa · TkA02G441280|TK1151|PROTEIN

MMASSSASTSATLTLSSIHLPQEPKSSLISSFSFKPNPKTKTLVLQSQSECTRPTNLKSSFGSFTSSKNSPFLVSAVAAEADLGEVVDEDAEGGSVATVVAPPPSKPKKGKAALPLKRDRTRSKRFLEIQKLREVKKEYDVKTAVSLLKQMSSTKFTESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQVVRVAVLTQGEKIDEAKNAGADIVGGEDLIEQIKGGFMEFDKLVATPDMMPKVASLGKILGPRGLMPNPKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G441280`
TK1151 ID	TkA02G441280
OH-1004 ID	LXL04_014289
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G441280

Location Chr02:112175562-112177902 (-)

Description Similar to RPL1: 50S ribosomal protein L1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63490`	This protein binds directly to 23S ribosomal RNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014289 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0006417 regulation of translation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0015934 large ribosomal subunit Cellular Component

GO:0000049 tRNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ana:alr5301

ath:AT3G63490

ava:Ava_2553

mar:MAE_36630

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.977

Rank 1 · TkA02G441280 · TK1151

Mitochondrion0.031

Rank 2 · TkA02G441280 · TK1151

Nucleus0.015

Rank 3 · TkA02G441280 · TK1151

Cytoplasm0.012

Rank 4 · TkA02G441280 · TK1151

Cell membrane0.009

Rank 5 · TkA02G441280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00687Ribosomal_L1148-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G441280	`PF00687`	Ribosomal_L1	148	338	1.6e-64	217.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LY66`	Arabidopsis thaliana	sp\|Q9LY66\|RK1_ARATH Large ribosomal subunit protein uL1c	80.900%	Swiss-Prot	High

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