TkA02G440910 | RubberDandelionOmics

Gene overview

TkA02G440910

Reference: TK1151 Chr: Chr02 Coordinates: 112062075-112063275 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

703 bp · TkA02G440910|TK1151|cDNA

AACTGATCGATGTTTGTTTTACAGGAGTCTAACATAACCGGTTGTAGTTGTCCACAAGGTTTTCGTGGAGATGGGCGTACTTGTGAAGATATCGACGAGTGTAAGGAAGGTAAAGTTTGTCGATGTGATGGGTGTACATGTAAGGACACTTATGGTGGATACGAGTGTAAATGCAAGGGGGACAAATTGTATATCGCCGATCAAGACACGTGTATCGAACGGAAGGCTTCAAAGTTCGCTTGGTTCATCAGTTTGTTGGT...

CDS

Download CDS FASTA

513 bp · TkA02G440910|TK1151|CDS

ATGTTTGTTTTACAGGAGTCTAACATAACCGGTTGTAGTTGTCCACAAGGTTTTCGTGGAGATGGGCGTACTTGTGAAGATATCGACGAGTGTAAGGAAGGTAAAGTTTGTCGATGTGATGGGTGTACATGTAAGGACACTTATGGTGGATACGAGTGTAAATGCAAGGGGGACAAATTGTATATCGCCGATCAAGACACGTGTATCGAACGGAAGGCTTCAAAGTTCGCTTGGTTCATCAGTTTGTTGGTACTAGGAGT...

Protein

Download Protein FASTA

170 aa · TkA02G440910|TK1151|PROTEIN

MFVLQESNITGCSCPQGFRGDGRTCEDIDECKEGKVCRCDGCTCKDTYGGYECKCKGDKLYIADQDTCIERKASKFAWFISLLVLGVVSSAGLAGYIFYRYRLRAYMDSEIMAIMSQYMPLDNHIQIKWLIMKTNLCIKHPLYNPQVTEEIQNSLENFQSTKNRNVRIYR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G440910`
TK1151 ID	TkA02G440910
OH-1004 ID	LXL04_019351
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	53.200
Protein coverage (%)	TK1151 72.353 / OH-1004 19.968 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G440910

Location Chr02:112062075-112063275 (-)

Description Similar to VSR1: Vacuolar-sorting receptor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g20110`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At1g30900`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At2g34940`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release
`At2g14720`	Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019351 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006896 Golgi to vacuole transport Biological Process

GO:0007034 vacuolar transport Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005770 late endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G14720

ath:AT2G14740

ath:AT2G30290

ath:AT3G52850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.672

Rank 1 · TkA02G440910 · TK1151

Cytoplasm0.181

Rank 2 · TkA02G440910 · TK1151

Endoplasmic reticulum0.109

Rank 3 · TkA02G440910 · TK1151

Nucleus0.077

Rank 4 · TkA02G440910 · TK1151

Extracellular0.077

Rank 5 · TkA02G440910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12947EGF_311-25 aa

PF12662cEGF12-30 aa

PF07645EGF_CA12-25 aa

PF14670FXa_inhibition12-25 aa

PF07645EGF_CA27-56 aa

PF12662cEGF37-39 aa

PF14670FXa_inhibition37-68 aa

PF12662cEGF42-46 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G440910	`PF12947`	EGF_3	11	25	0.003	18.4
TkA02G440910	`PF12662`	cEGF	12	30	1e-08	35.5
TkA02G440910	`PF07645`	EGF_CA	12	25	0.0011	19.9
TkA02G440910	`PF14670`	FXa_inhibition	12	25	0.068	14.1
TkA02G440910	`PF07645`	EGF_CA	27	56	0.0011	19.9
TkA02G440910	`PF12662`	cEGF	37	39	1e-08	35.5
TkA02G440910	`PF14670`	FXa_inhibition	37	68	0.068	14.1
TkA02G440910	`PF12662`	cEGF	42	46	1e-08	35.5
TkA02G440910	`PF12947`	EGF_3	43	56	0.003	18.4
TkA02G440910	`PF12662`	cEGF	50	56	1e-08	35.5
TkA02G440910	`PF12662`	cEGF	61	69	1e-08	35.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L7E3`	Arabidopsis thaliana	sp\|Q8L7E3\|VSR7_ARATH Vacuolar-sorting receptor 7	65.300%	Swiss-Prot	High
`Q9FYH7`	Arabidopsis thaliana	sp\|Q9FYH7\|VSR6_ARATH Vacuolar-sorting receptor 6	62.300%	Swiss-Prot	Medium
`O64758`	Arabidopsis thaliana	sp\|O64758\|VSR5_ARATH Vacuolar-sorting receptor 5	53.800%	Swiss-Prot	Medium
`Q56ZQ3`	Arabidopsis thaliana	sp\|Q56ZQ3\|VSR4_ARATH Vacuolar-sorting receptor 4	53.800%	Swiss-Prot	Medium

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