TkA02G438580 | RubberDandelionOmics

Gene overview

TkA02G438580

Reference: TK1151 Chr: Chr02 Coordinates: 111420097-111422456 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1446 bp · TkA02G438580|TK1151|cDNA

TACACATCTTTAAGGTTTTAGTATATATAGGAACTCGAATACGCAACTCCAATATATACAACTCCAAACCCTAATTTAATAACATAACCCCGCAAGAAAGCCATGTCACTTGCTTTTTACCCCAACTCTCCTGTTTCAGAGACCAACAAATGGATGATGACCTTCCATGCTACTATTCCTCCTGACGATAGCTGCCAAAATAAAACCGAAACCTCTATGACAAGAGACAATATAACGAGCGTGGCAACAGCAGGGCAGGA...

CDS

Download CDS FASTA

1035 bp · TkA02G438580|TK1151|CDS

ATGTCACTTGCTTTTTACCCCAACTCTCCTGTTTCAGAGACCAACAAATGGATGATGACCTTCCATGCTACTATTCCTCCTGACGATAGCTGCCAAAATAAAACCGAAACCTCTATGACAAGAGACAATATAACGAGCGTGGCAACAGCAGGGCAGGAGTTTCATCAGAAGAAACTTCCGAAGGGATGGTTTTGGTTCCGAAAATGGGATTTTGAAGACTTGGCCAGCATTTCGTGGTTTGCCGGGATTCATGTGTTGGC...

Protein

Download Protein FASTA

344 aa · TkA02G438580|TK1151|PROTEIN

MSLAFYPNSPVSETNKWMMTFHATIPPDDSCQNKTETSMTRDNITSVATAGQEFHQKKLPKGWFWFRKWDFEDLASISWFAGIHVLAACAPFVYDSGAFKLAVVLGFMSGFGITLGYHRLLCHRSYKVPKWLEYFFAYCGAHAFQRDPMFYVNTHKNHHRYTDTDRDPVSTDYGYWYCNMGWFFNNDLIAAKCRESRGGQYSKVPELKAQWFYRFLHDTYFWHPAVLAALLYVHGGFPYLAWAMGFRAVVVHHFASFASY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G438580`
TK1151 ID	TkA02G438580
OH-1004 ID	LXL04_014336
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G438580

Location Chr02:111420097-111422456 (+)

Description Similar to Icosanoyl-CoA 5-desaturase (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15850`	Fatty acid desaturase involved in the first desaturation step leading to the formation of hexadeca 7,10,13-trienoic acid (16:3(7Z,10Z,13Z)), the major functional components of thylakoid membranes.	Switching desaturase enzyme specificity by alternate subcellular targeting.2004 · DOI: 10.1073/pnas.0402200101 Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype.2004 · DOI: 10.1104/pp.104.052951
`At1g06080`	Involved in delta-9 desaturation of fatty acids (Probable).	Involvement of Arabidopsis ACYL-COENZYME A DESATURASE-LIKE2 (At2g31360) in the biosynthesis of the very-long-chain monounsaturated fatty acid components of membrane lipids.2013 · DOI: 10.1104/pp.112.202325
`At1g06120`	Delta-9 desaturase-like 3 protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014336 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006636 unsaturated fatty acid biosynthetic process Biological Process

GO:0010205 photoinhibition Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ag:AAG28599

ath:AT1G06080

ath:AT1G06100

ath:AT3G15850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.764

Rank 1 · TkA02G438580 · TK1151

Mitochondrion0.102

Rank 2 · TkA02G438580 · TK1151

Cell membrane0.068

Rank 3 · TkA02G438580 · TK1151

Cytoplasm0.068

Rank 4 · TkA02G438580 · TK1151

Nucleus0.046

Rank 5 · TkA02G438580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00487FA_desaturase101-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G438580	`PF00487`	FA_desaturase	101	318	3e-18	67.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q949X0`	Arabidopsis thaliana	sp\|Q949X0\|ADS3_ARATH Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic	44.000%	Swiss-Prot	Medium
`O65797`	Arabidopsis thaliana	sp\|O65797\|ADS1_ARATH Delta-9 acyl-lipid desaturase 1	42.100%	Swiss-Prot	Medium
`Q9FPD5`	Arabidopsis thaliana	sp\|Q9FPD5\|ADSL3_ARATH Delta-9 desaturase-like 3 protein	45.700%	Swiss-Prot	Medium

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