TkA02G425120 | RubberDandelionOmics

Gene overview

TkA02G425120

Reference: TK1151 Chr: Chr02 Coordinates: 107969115-107969933 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

786 bp · TkA02G425120|TK1151|cDNA

ATGGAAAGAGGATGGAAGCCCAACGTCGAGATATGCCCACCATGTCCTCGTTGTGGTTCATCCAGTACCAAGTTCTGTTACTACAACAATTACAGTTTGACTCAACCTAGGTATTTCTGTAAAGGGTGTAGAAGATATTGGACTAAAGGCGGCTCACTCAGAAACATCCCTGTCGGTGGTGGTTGCCGGAAAACCAGACGATCGAAATCTATTCGTATCTCTGGTGGTCGTGGAACCGCCGGTTATGGAGGTCGTGGGAA...

CDS

Download CDS FASTA

786 bp · TkA02G425120|TK1151|CDS

ATGGAAAGAGGATGGAAGCCCAACGTCGAGATATGCCCACCATGTCCTCGTTGTGGTTCATCCAGTACCAAGTTCTGTTACTACAACAATTACAGTTTGACTCAACCTAGGTATTTCTGTAAAGGGTGTAGAAGATATTGGACTAAAGGCGGCTCACTCAGAAACATCCCTGTCGGTGGTGGTTGCCGGAAAACCAGACGATCGAAATCTATTCGTATCTCTGGTGGTCGTGGAACCGCCGGTTATGGAGGTCGTGGGAA...

Protein

Download Protein FASTA

261 aa · TkA02G425120|TK1151|PROTEIN

MERGWKPNVEICPPCPRCGSSSTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKTRRSKSIRISGGRGTAGYGGRGNVENLNHSSGIGGGSTMVQPTNIDLQQVYANFVNQRPQIGHHEQTHDQILHSEIDPMSSFGFSNIPNMEMEFGGTNYGSNLESILSEGNGMQFCGYNSIFTNNEEDHEKNYFGARGMSNCGLPPLPGEEMGWSESNIGFSELVVNSTIEPEGRVSGECPVKMFDLPPNSDTIFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G425120`
TK1151 ID	TkA02G425120
OH-1004 ID	LXL04_014446
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G425120

Location Chr02:107969115-107969933 (+)

Description Similar to DOF3.5: Dof zinc finger protein DOF3.5

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52440`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g21340`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g60200`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At4g24060`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0726300`	Transcription factor that may transactivate seed storage protein genes in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014446 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G21340

ath:AT3G45610

ath:AT3G52440

ath:AT4G24060

ath:AT5G60200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.956

Rank 1 · TkA02G425120 · TK1151

Cytoplasm0.143

Rank 2 · TkA02G425120 · TK1151

Cell membrane0.022

Rank 3 · TkA02G425120 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA02G425120 · TK1151

Mitochondrion0.010

Rank 5 · TkA02G425120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14354Lar_restr_allev13-45 aa

PF12760Zn_ribbon_IS159513-45 aa

PF02701Zn_ribbon_Dof14-67 aa

PF23451Zn_ribbon_PaaD14-44 aa

PF02701Zn_ribbon_Dof177-184 aa

PF14354Lar_restr_allev179-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G425120	`PF14354`	Lar_restr_allev	13	45	3.7	8.6
TkA02G425120	`PF12760`	Zn_ribbon_IS1595	13	45	8.8	7.1
TkA02G425120	`PF02701`	Zn_ribbon_Dof	14	67	3e-30	104.9
TkA02G425120	`PF23451`	Zn_ribbon_PaaD	14	44	1.8	9.0
TkA02G425120	`PF02701`	Zn_ribbon_Dof	177	184	3e-30	104.9
TkA02G425120	`PF14354`	Lar_restr_allev	179	196	3.7	8.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SVC5`	Arabidopsis thaliana	sp\|Q9SVC5\|DOF35_ARATH Dof zinc finger protein DOF3.5	46.700%	Swiss-Prot	Medium
`P68349`	Arabidopsis thaliana	sp\|P68349\|DOF12_ARATH Dof zinc finger protein DOF1.2	76.800%	Swiss-Prot	Low
`Q84TE9`	Arabidopsis thaliana	sp\|Q84TE9\|DOF53_ARATH Dof zinc finger protein DOF5.3	80.300%	Swiss-Prot	Low
`Q8LAP8`	Arabidopsis thaliana	sp\|Q8LAP8\|DOF46_ARATH Dof zinc finger protein DOF4.6	76.200%	Swiss-Prot	Low
`Q6Z345`	Oryza sativa subsp. japonica	sp\|Q6Z345\|DOF4_ORYSJ Dof zinc finger protein 4	80.400%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card