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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G424470
Reference: TK1151 Chr: Chr02 Coordinates: 107803924-107807161 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

836 bp · TkA02G424470|TK1151|cDNA

GTCAAAACCACTTTGACCAGTTTGCTCGGGTGCGAATAGAATACCCCATTATTTATATTAAGACGGTAAAAATTGAATTAGGGTTTTTGAACGGCTTCAGCTCACCTACGTCGCCTTGCACCCTCTTCCAGCTCCACTGCTTCAAGTCTTTGCTCTCTACGCCTTCAACCGCTCGCCTCCGACAATCCCTCCAGCCTCCACGACTCCGCCTTCGGCGACTTCTTGCGGTTTCATCTCCTCTCTACAAACAACAAAACAAA...

CDS

Download CDS FASTA

687 bp · TkA02G424470|TK1151|CDS

ATGTCATCCCTAAAGCATGCTGTCCATAGAAGGACCCACAAGGAACGATCTCAACCAAAAGAAAGGAAAAGATTTGGACTTCTTGAAAAACACAAGGACTACGTTGTCCGTGCAAAGGCCTTTCATAAAAAAGAGGATTACTTGCAGAAACTGAAGGAAAAGGCAGCATTCAAGAATCCAGATGAATTCTACTTCAAGATGATCAACTCCAAGACTGTTAATGGAGTACATAAACAGGCGGGTGACCCAAATCAATACTC...

Protein

Download Protein FASTA

228 aa · TkA02G424470|TK1151|PROTEIN

MSSLKHAVHRRTHKERSQPKERKRFGLLEKHKDYVVRAKAFHKKEDYLQKLKEKAAFKNPDEFYFKMINSKTVNGVHKQAGDPNQYSQELLLMKSQDIGYILQKVQSEKKKIEKLTATLHSLDSQPSNRHVYYAEDREDAKRIISERKSDGGFKAFEDLPVKIKRKTASSYRELEARRGRVEELEKVYNEMAMKQELRKKGKKRKLREDEIVNPSSRPVYKWRTERKR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G424470
TK1151 IDTkA02G424470
OH-1004 IDLXL04_014455
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 98.684 / OH-1004 11.266
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G424470
LocationChr02:107803924-107807161 (+)
DescriptionSimilar to Os01g0810000: Probable U3 small nucleolar RNA-associated protein 11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g60360 Involved in nucleolar processing of pre-18S ribosomal RNA. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0810000 Involved in nucleolar processing of pre-18S ribosomal RNA. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014455 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006364 rRNA processing Biological Process
GO:0009561 megagametogenesis Biological Process
GO:0032197 retrotransposition Biological Process
GO:0090304 nucleic acid metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0032040 small-subunit processome Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003824 catalytic activity Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function
KEGG gene cross-reference
ath:AT3G60360
dosa:Os01g0810000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.967
Rank 1 · TkA02G424470 · TK1151
Cytoplasm0.107
Rank 2 · TkA02G424470 · TK1151
Mitochondrion0.013
Rank 3 · TkA02G424470 · TK1151
Cell membrane0.010
Rank 4 · TkA02G424470 · TK1151
Extracellular0.006
Rank 5 · TkA02G424470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03998Utp1110-228 aa
PF18160SLATT_525-57 aa
PF14579HHH_634-57 aa
PF09675Chlamy_scaf55-77 aa
PF14579HHH_6102-117 aa
PF27980EML_helical105-123 aa
PF27980EML_helical127-149 aa
PF14579HHH_6137-168 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G424470PF03998Utp11102288.1e-58196.9
TkA02G424470PF18160SLATT_525570.2611.4
TkA02G424470PF14579HHH_634570.05214.4
TkA02G424470PF09675Chlamy_scaf55770.1213.2
TkA02G424470PF14579HHH_61021170.05214.4
TkA02G424470PF27980EML_helical1051230.3911.7
TkA02G424470PF27980EML_helical1271490.3911.7
TkA02G424470PF14579HHH_61371680.05214.4
TkA02G424470PF12836HHH_31401600.06114.1
TkA02G424470PF09675Chlamy_scaf1541980.1213.2
TkA02G424470PF12836HHH_31711880.06114.1
TkA02G424470PF18160SLATT_51832020.2611.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M223Arabidopsis thalianasp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 1158.100%Swiss-ProtHigh
Q8S1Z1Oryza sativa subsp. japonicasp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 1162.900%Swiss-ProtHigh

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