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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G422370
Reference: TK1151 Chr: Chr02 Coordinates: 107257652-107262138 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3844 bp · TkA02G422370|TK1151|cDNA

CGACTATTCTCTTTGTCTCTTATCTATAAGTATCATCAACTTTACTTCTAAACATATCATCCATCTCCCACCATCTCTCCCCCTTCAACCCTCTTCACCCATCACCGGTGAACCATGAGAGTTACCGCCGGTGGCGGCAGGCCTTTCCGGGCTAGTCTATGGCCTATAGTTATCGCATTCGCGGTATTTGGGGTTGCTAACCTTTTAGCTGTTTCGGCTGACCCTTACATCTATTCTTCACCGCCTCCTCCATATGTTTA...

CDS

Download CDS FASTA

3300 bp · TkA02G422370|TK1151|CDS

ATGAGAGTTACCGCCGGTGGCGGCAGGCCTTTCCGGGCTAGTCTATGGCCTATAGTTATCGCATTCGCGGTATTTGGGGTTGCTAACCTTTTAGCTGTTTCGGCTGACCCTTACATCTATTCTTCACCGCCTCCTCCATATGTTTACAAATCACCACCTCCACCTGTGCATTCACCACCACCACCTTATGAATATAAATCTCCACCACCACCGGAGCATTCACCACCGCCACCATATGTGTATAAGTCTCCACCTCCGCC...

Protein

Download Protein FASTA

1099 aa · TkA02G422370|TK1151|PROTEIN

MRVTAGGGRPFRASLWPIVIAFAVFGVANLLAVSADPYIYSSPPPPYVYKSPPPPVHSPPPPYEYKSPPPPEHSPPPPYVYKSPPPPVHSPPPPYEYKSPPPPIHSPPPPYEYKSPPPPVHSPPPPYEYKSPPPPVHSPPPPYEYKSPPPPVHSPPPPYEYKSPPPPVHSPPPPYEYKSPPPPVHSPPPPYEYKSPPPPVHSPPPPYEYKSPPPPVKSPPPPYEYKSPPPPVKSPPPPYYYKSPPPPVHSPPPPYYYKSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G422370
TK1151 IDTkA02G422370
OH-1004 IDLXL04_014485
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 18.107 / OH-1004 18.107
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G422370
LocationChr02:107257652-107262138 (-)
DescriptionSimilar to MUC1: Mucin-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014485 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010944 negative regulation of transcription by competitive promoter binding Biological Process
GO:0031571 mitotic G1 DNA damage checkpoint signaling Biological Process
GO:0033629 negative regulation of cell adhesion mediated by integrin Biological Process
GO:0043484 regulation of RNA splicing Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0000785 chromatin Cellular Component
GO:0005615 extracellular space Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005796 Golgi lumen Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016324 apical plasma membrane Cellular Component
KEGG gene cross-reference
hsa:389677
hsa:4582
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.865
Rank 1 · TkA02G422370 · TK1151
Endoplasmic reticulum0.069
Rank 2 · TkA02G422370 · TK1151
Cell membrane0.068
Rank 3 · TkA02G422370 · TK1151
Cytoplasm0.038
Rank 4 · TkA02G422370 · TK1151
Nucleus0.016
Rank 5 · TkA02G422370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04554Extensin_236-71 aa
PF04554Extensin_273-103 aa
PF04554Extensin_2106-151 aa
PF04554Extensin_2137-167 aa
PF04554Extensin_2169-199 aa
PF04554Extensin_2201-231 aa
PF04554Extensin_2229-280 aa
PF04554Extensin_2265-296 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G422370PF04554Extensin_236715.1e-77254.6
TkA02G422370PF04554Extensin_2731035.1e-77254.6
TkA02G422370PF04554Extensin_21061515.1e-77254.6
TkA02G422370PF04554Extensin_21371675.1e-77254.6
TkA02G422370PF04554Extensin_21691995.1e-77254.6
TkA02G422370PF04554Extensin_22012315.1e-77254.6
TkA02G422370PF04554Extensin_22292805.1e-77254.6
TkA02G422370PF04554Extensin_22652965.1e-77254.6
TkA02G422370PF04554Extensin_22823125.1e-77254.6
TkA02G422370PF04554Extensin_22903445.1e-77254.6
TkA02G422370PF04554Extensin_23363865.1e-77254.6
TkA02G422370PF01190Pollen_Ole_e_13925211.1e-0526.3
TkA02G422370PF04554Extensin_25235685.1e-77254.6
TkA02G422370PF04554Extensin_25706005.1e-77254.6
TkA02G422370PF04554Extensin_25926475.1e-77254.6
TkA02G422370PF04554Extensin_26336635.1e-77254.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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