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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G407430
Reference: TK1151 Chr: Chr02 Coordinates: 103614695-103617821 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2371 bp · TkA02G407430|TK1151|cDNA

ACGTCATGGACGAATTTGCCAACTGCCAAGCCACTATATATATATAGGCTGACATATCTAATACCCTACGATATACACACTCAATCCCATCTGAAACCAACATAACAGAGAGATGTATGATGAGATTGAGAAAGAGTGCCACCCTCTGTTACAAGGTGGGAGAGACGAAAAGTACGTAAACGGAGGCTTTTCTTCATCAGGAATGGCGACTCTGAGCAGTATATGTGACGTCATCCTGCAACCACTCCCTTTGAATTCTC...

CDS

Download CDS FASTA

2232 bp · TkA02G407430|TK1151|CDS

ATGTATGATGAGATTGAGAAAGAGTGCCACCCTCTGTTACAAGGTGGGAGAGACGAAAAGTACGTAAACGGAGGCTTTTCTTCATCAGGAATGGCGACTCTGAGCAGTATATGTGACGTCATCCTGCAACCACTCCCTTTGAATTCTCTCGATGATCATGGCAACAAAGATGACGAAACCATCCGCTCGTTCTCCTCTGTTTCTGGTTCTCAATACCCAATACCTAATAAGCTAGTTCATCTTCTGGTAACGAGGGCGTT...

Protein

Download Protein FASTA

743 aa · TkA02G407430|TK1151|PROTEIN

MYDEIEKECHPLLQGGRDEKYVNGGFSSSGMATLSSICDVILQPLPLNSLDDHGNKDDETIRSFSSVSGSQYPIPNKLVHLLVTRAFFEAIMVVKLVVIILSTRLGTLLLSGTLCISHKWPYVHKFSEIPLHKREKVVQKWMNHRFLTPIRLGFVFIKTLCLLVFFSQADKKAENPAWEAIGYHVDLKEEEPRKDQKERPLQKGMVEIMKETDQTLVHSLIQKGLDVTENLKENTCKIKCDVVIVGSGCGGGVAAAILAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G407430
TK1151 IDTkA02G407430
OH-1004 IDLXL04_014625
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G407430
LocationChr02:103614695-103617821 (+)
DescriptionSimilar to FAO1: Long-chain-alcohol oxidase FAO1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23410 Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
Functional identification of AtFao3, a membrane bound long chain alcohol oxidase in Arabidopsis thaliana.2004 · DOI: 10.1016/j.febslet.2004.07.086
Cloning and characterization of long-chain fatty alcohol oxidase LjFAO1 in lotus japonicus.2008 · DOI: 10.1021/bp0703533
At4g28570 Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. No verified direct reference in this release
At1g03990 Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014625 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006066 alcohol metabolic process Biological Process
GO:0009409 response to cold Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0016020 membrane Cellular Component
GO:0046577 long-chain-alcohol oxidase activity Molecular Function
GO:0050660 flavin adenine dinucleotide binding Molecular Function
KEGG gene cross-reference
ag:CAP15762
ath:AT1G03990
ath:AT3G23410
ath:AT4G28570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.471
Rank 1 · TkA02G407430 · TK1151
Peroxisome0.275
Rank 2 · TkA02G407430 · TK1151
Cytoplasm0.124
Rank 3 · TkA02G407430 · TK1151
Endoplasmic reticulum0.080
Rank 4 · TkA02G407430 · TK1151
Nucleus0.057
Rank 5 · TkA02G407430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01266DAO21-33 aa
PF01946Thi4238-270 aa
PF01494FAD_binding_3239-276 aa
PF00996GDI240-292 aa
PF00890FAD_binding_2241-274 aa
PF12831FAD_oxidored241-272 aa
PF07992Pyr_redox_2241-273 aa
PF03486HI0933_like241-277 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G407430PF01266DAO21330.1212.6
TkA02G407430PF01946Thi42382700.002218.0
TkA02G407430PF01494FAD_binding_32392765.3e-0523.3
TkA02G407430PF00996GDI2402920.0912.0
TkA02G407430PF00890FAD_binding_22412748.8e-0625.9
TkA02G407430PF12831FAD_oxidored2412720.00218.2
TkA02G407430PF07992Pyr_redox_22412730.002218.2
TkA02G407430PF03486HI0933_like2412770.002718.0
TkA02G407430PF01134GIDA2412690.05513.2
TkA02G407430PF01266DAO2412740.1212.6
TkA02G407430PF00070Pyr_redox2422750.06414.5
TkA02G407430PF13450NAD_binding_82442731.2e-0526.3
TkA02G407430PF00732GMC_oxred_N2885081.2e-77261.3
TkA02G407430PF05199GMC_oxred_C3944087.1e-2382.4
TkA02G407430PF01946Thi44204430.002218.0
TkA02G407430PF05199GMC_oxred_C5997307.1e-2382.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LW56Arabidopsis thalianasp|Q9LW56|FAO3_ARATH Long-chain-alcohol oxidase FAO359.200%Swiss-ProtHigh
Q94BP3Arabidopsis thalianasp|Q94BP3|FAO4B_ARATH Long-chain-alcohol oxidase FAO4B55.300%Swiss-ProtHigh
Q9ZWB9Arabidopsis thalianasp|Q9ZWB9|FAO1_ARATH Long-chain-alcohol oxidase FAO152.600%Swiss-ProtHigh

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