TkA02G407000 | RubberDandelionOmics

Gene overview

TkA02G407000

Reference: TK1151 Chr: Chr02 Coordinates: 103498644-103501115 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1982 bp · TkA02G407000|TK1151|cDNA

TATCTTACAATTGTTCATAAAGAGTGTCATTATAAAAATTTAAAGGGTGTCCTCCTAAATAATATTACATACTCTCTAAATACTTTTTAAAATTAAGGAGTGTCAAGGGACACCCTTTGTCATAGAGTAGGATCGCCCCTGATCGCCACCATCCCCAAGCACAGTTGCCTCACCGTCAAGTCCTCCGGTGCTTGCCAACTAATCGAAGATTTCTGTCTCGAAGGTTACATGGCACTTTCCGTAGCTCTCATGTACGAGAA...

CDS

Download CDS FASTA

1479 bp · TkA02G407000|TK1151|CDS

ATGGCGAGCAGCCGACGAATGAGGGCATTCAAACGGTGGATGAAATGGCAGTCAGTAGAATACAGCGACGCTCTGGACCTCATAATACAAAAAGAAGACGAACAAGTATGGGTGAAGGCATTATCTGATTTATACGAAGGCGACGTGATCGCCACCAGTGGCGAATCTAGGATTGAATTTCATAGAGTAGGATCGCCCCTGATCGCCACCATCCCCAAGCACAGTTGCCTCACCGTCAAGTCCTCCGGTGCTTGCCAACT...

Protein

Download Protein FASTA

492 aa · TkA02G407000|TK1151|PROTEIN

MASSRRMRAFKRWMKWQSVEYSDALDLIIQKEDEQVWVKALSDLYEGDVIATSGESRIEFHRVGSPLIATIPKHSCLTVKSSGACQLIEDFCLEGYMALSVALMYEKSLGQNSPWFGYLHFMADRNSDVPLLWSLDEIDDLLLGTELHKTVKEDKALVYEDWKSCIVPFVESVPIELNPDDFGVEQYFAAKSLISSRSFQIDDHYGFGMVPLADLFNHKTDAEDVHFTSVSESESDDDTSENMEEEHVDDDGSDLVETES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G407000`
TK1151 ID	TkA02G407000
OH-1004 ID	LXL04_014634
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G407000`
Location	Chr02:103498644-103501115 (-)
Description	Similar to setd6: N-lysine methyltransferase setd6
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014634` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0018026 peptidyl-lysine monomethylation Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0016279 protein-lysine N-methyltransferase activity Molecular Function
KEGG gene cross-reference	dre:322348 sasa:100306753 sce:YBR030W xla:443830 xtr:100125156 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.617

Rank 1 · TkA02G407000 · TK1151

Cytoplasm0.483

Rank 2 · TkA02G407000 · TK1151

Mitochondrion0.052

Rank 3 · TkA02G407000 · TK1151

Cell membrane0.032

Rank 4 · TkA02G407000 · TK1151

Endoplasmic reticulum0.028

Rank 5 · TkA02G407000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09273Rubis-subs-bind8-44 aa

PF09273Rubis-subs-bind227-244 aa

PF00856SET261-296 aa

PF09273Rubis-subs-bind357-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G407000	`PF09273`	Rubis-subs-bind	8	44	1.0	10.8
TkA02G407000	`PF09273`	Rubis-subs-bind	227	244	1.0	10.8
TkA02G407000	`PF00856`	SET	261	296	0.1	13.8
TkA02G407000	`PF09273`	Rubis-subs-bind	357	474	1.0	10.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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