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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G401240
Reference: TK1151 Chr: Chr02 Coordinates: 101871458-101877933 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4136 bp · TkA02G401240|TK1151|cDNA

TTAAAGGTGCCTCTATATTTTCTCTCTCTTCTTGCAGTCTGAACTCTTTCCTGCACAGCTGATTACAAGATCAATCAGTCATTTATTTCATCTTCGTCAGCTTGATCTAAGCTCTAGCGGTCAAAGCCATTCAAATTACGCAACTTTTCCCCTCTCATTGTGATCGAATCTATCCCAAATTAACTCGAAGTGGCGTTCAATTTCAGCGTAATTTTTTGTTAGAATACTGCGATTAATTGATTTCCAATCATCTCTGCTGG...

CDS

Download CDS FASTA

1707 bp · TkA02G401240|TK1151|CDS

ATGACGGTGGCGCTAACAACCTCCGGTCACGTCTACACAATGGGAAGTCACGTGTACGGTCAACTCGGGAATCCTCAGGCGGACGGAAAACTCCCCGGCTGCGTCGACGGAAAACTCTCAAAAAGTTTCGTGGAGGAAATATCCTGCGGCGCGTATCACGTTGCGGTTTTAACCTCGAGAACCGAAGTTTACACGTGGGGTAAAGGCGCGAATGGCCGACTTGGTCATGGAGACATAGATGACCGAAATACCCCTACTTT...

Protein

Download Protein FASTA

568 aa · TkA02G401240|TK1151|PROTEIN

MTVALTTSGHVYTMGSHVYGQLGNPQADGKLPGCVDGKLSKSFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGDIDDRNTPTLVESLKDKQVKSIACGTNFTAAICLHKWVSGSDQSMCSGCHLPFNFKRKRHNCYNCGLVFCHSCSSKKSLRASMALNPNKPYRVCDNCFTKLKKVNDFDSSSVRNGVPNGNTNSNQTLNDGIRDDKSESSFRPRLARLSSMESLRPFENRTSKRNNKKLEFNSSRVSPIPNGSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G401240
TK1151 IDTkA02G401240
OH-1004 IDLXL04_023299
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)73.200
Protein coverage (%)TK1151 99.648 / OH-1004 50.613
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G401240
LocationChr02:101871458-101877933 (-)
DescriptionSimilar to PRAF1: PH, RCC1 and FYVE domains-containing protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76950 Binds to phosphatidic acid and to phosphoinositides such as PtdIns3P, PtdIns(3,4)P(2), PtdIns(3,4,5)P(3) and PtdIns(4,5)P(2). No verified direct reference in this release
At5g20540 Protein Brevis radix-like 4. No verified direct reference in this release
At2g35600 May act as a regulator of cell proliferation and elongation in the root.
Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation.2006 · DOI: 10.1104/pp.105.075382

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0462700 Protein Brevis radix-like 1. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023299 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009411 response to UV Biological Process
GO:0009649 entrainment of circadian clock Biological Process
GO:0010224 response to UV-B Biological Process
GO:0010374 stomatal complex development Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0003682 chromatin binding Molecular Function
GO:0005085 guanyl-nucleotide exchange factor activity Molecular Function
KEGG gene cross-reference
ath:AT1G76950
ath:AT5G63860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.520
Rank 1 · TkA02G401240 · TK1151
Cell membrane0.308
Rank 2 · TkA02G401240 · TK1151
Nucleus0.272
Rank 3 · TkA02G401240 · TK1151
Golgi apparatus0.063
Rank 4 · TkA02G401240 · TK1151
Lysosome / Vacuole0.047
Rank 5 · TkA02G401240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25390WD40_RLD2-108 aa
PF13540RCC1_22-21 aa
PF00415RCC18-57 aa
PF13540RCC1_245-72 aa
PF25384Alsin_RLD60-109 aa
PF00415RCC162-109 aa
PF13540RCC1_296-109 aa
PF01363FYVE113-179 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G401240PF25390WD40_RLD21081.2e-2488.0
TkA02G401240PF13540RCC1_22211.1e-1248.1
TkA02G401240PF00415RCC18576.7e-2794.5
TkA02G401240PF13540RCC1_245721.1e-1248.1
TkA02G401240PF25384Alsin_RLD601090.01215.5
TkA02G401240PF00415RCC1621096.7e-2794.5
TkA02G401240PF13540RCC1_2961091.1e-1248.1
TkA02G401240PF01363FYVE1131791.5e-1661.0
TkA02G401240PF28755DUF84551131561.29.8
TkA02G401240PF28755DUF84551701791.29.8
TkA02G401240PF08614ATG163114023.38.6
TkA02G401240PF10422LRS43294560.03914.6
TkA02G401240PF02672CP123313590.8411.2
TkA02G401240PF23649FKBP153334010.03714.4
TkA02G401240PF00261Tropomyosin3364020.003617.5
TkA02G401240PF02672CP123593970.8411.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q947D2Arabidopsis thalianasp|Q947D2|PRAF1_ARATH PH, RCC1 and FYVE domains-containing protein 146.500%Swiss-ProtMedium
Q8GZ92Arabidopsis thalianasp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 451.900%Swiss-ProtLow
O82281Arabidopsis thalianasp|O82281|BRXL1_ARATH Protein Brevis radix-like 152.400%Swiss-ProtLow
Q6YUB8Oryza sativa subsp. japonicasp|Q6YUB8|BRXL1_ORYSJ Protein Brevis radix-like 164.300%Swiss-ProtLow

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