TkA02G391400 | RubberDandelionOmics

Gene overview

TkA02G391400

Reference: TK1151 Chr: Chr02 Coordinates: 99457778-99459794 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1504 bp · TkA02G391400|TK1151|cDNA

CTGAATCCTGATTTCTAGCCAAAAATATCTCCAATCTCGGCGGCCTTCCCTTATATTTCTGTCTCCGCAAAACTCCCGAATACAAACAATAATGGCGGAGGAGCGCACCCACCTTCCTCTCCACATGAATTCTTCAATCCCTCCACCACTTCTCCTTCAACCACTAGGGATTTAATTTTACAAAATCGCACCTTTGGTTCCCCGTACTCTCTTGGCGATCTAGGATTTTAGCGTGAAGCTACCTCTTGATCACCTGGAAT...

CDS

Download CDS FASTA

978 bp · TkA02G391400|TK1151|CDS

ATGCCTACTCAAACTTTGATGTTTGTTCCTGCTATGCCTTCTATCCTATGTCAAACAATCGGTATTTCTAAGTTACGATCAAAAGCATCCCTCTCAAATCATCTTGCCACACTTCCTCAATCTGGACTTCAAAACGACCTAGAAGAAGAATCATACTCGATGGAACAAGAACAGCTTGGAACTTGTTCTTCATCGACTTCAATGGCACCAATTGACGATAACAATATGAGGAAAATCAAACAATCATCACACTCCAAATT...

Protein

Download Protein FASTA

325 aa · TkA02G391400|TK1151|PROTEIN

MPTQTLMFVPAMPSILCQTIGISKLRSKASLSNHLATLPQSGLQNDLEEESYSMEQEQLGTCSSSTSMAPIDDNNMRKIKQSSHSKFPLTFLELAGASCVFLCFAVGLTGVYLTLSDSDYSFLKLPRTIEDLHILREHLETYTSDYTMQVLIGYCTVYIFMQTFMITGTVFMSLLAGSLFGVLKGITLVVFAATAGASSCYFLSKLIGRPLINSLWPDKLVFFQNQVAKRRSGLLNYMLFLRVTPTLPNTFLNVASPIVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G391400`
TK1151 ID	TkA02G391400
OH-1004 ID	LXL04_029389
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	77.400
Protein coverage (%)	TK1151 83.077 / OH-1004 99.275 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G391400

Location Chr02:99457778-99459794 (+)

Description Similar to At4g09580: Uncharacterized membrane protein At4g09580

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g09580`	Uncharacterized membrane protein At4g09580.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029389 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0032365 intracellular lipid transport Biological Process

GO:0044830 host-mediated perturbation of viral RNA genome replication Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0044233 mitochondria-associated endoplasmic reticulum membrane contact site Cellular Component

GO:0017128 phospholipid scramblase activity Molecular Function

KEGG gene cross-reference

ath:AT4G09580

ddi:DDB_G0275543

gga:423047

rno:361626

xla:495477

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.370

Rank 1 · TkA02G391400 · TK1151

Golgi apparatus0.251

Rank 2 · TkA02G391400 · TK1151

Lysosome / Vacuole0.118

Rank 3 · TkA02G391400 · TK1151

Nucleus0.105

Rank 4 · TkA02G391400 · TK1151

Cell membrane0.102

Rank 5 · TkA02G391400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09335VTT_dom100-114 aa

PF09335VTT_dom150-164 aa

PF09335VTT_dom170-282 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G391400	`PF09335`	VTT_dom	100	114	1.1e-12	49.2
TkA02G391400	`PF09335`	VTT_dom	150	164	1.1e-12	49.2
TkA02G391400	`PF09335`	VTT_dom	170	282	1.1e-12	49.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L586`	Arabidopsis thaliana	sp\|Q8L586\|Y4958_ARATH Uncharacterized membrane protein At4g09580	58.800%	Swiss-Prot	High

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