TkA02G388860 | RubberDandelionOmics

Gene overview

TkA02G388860

Reference: TK1151 Chr: Chr02 Coordinates: 98852397-98854293 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1058 bp · TkA02G388860|TK1151|cDNA

TCCATCTCTCACTTTTTCCATTGATGGGGGTGGAGTTTTGTTTTGTTCTCACTACAGAACTAAAACTTTCTTTTTCCATATACTTTTTTGAAAATCTCATAAAAGGAACTGCCCTTTCAGATCTAAATCAGATGGGTTTCCTTTAAAGTCCACATTTTTGACTTTTTTTAACAGCTGAAATCCAGCCCAGAAACTGTGAAACAATACGCGTCCTTCGCTATCACTGTGTATAGATTCTTGTTTTTCTTGCATATAAACAA...

CDS

Download CDS FASTA

708 bp · TkA02G388860|TK1151|CDS

ATGGGGAGGATTTCGGCTGTCGAAATTACTTTACAATCGTTTACCAGTGGAGATGACATCATTCGGAAAATTATCGAGATCTGGGGCCAATTTAGAGTGCCAATTTTAGCGCCATTGTTAAGAATCTTGATGTATGTTTCTCTTGCGATGTCCATAATGTTGTTCTTAGAGAAGGTTTATATGTCATTGGTGGTTGGATTCAATTGGTTATTTCTAAGAAAGACAGAAAAACGCTACAAATGGGAAGAATTCAAAAAAGA...

Protein

Download Protein FASTA

235 aa · TkA02G388860|TK1151|PROTEIN

MGRISAVEITLQSFTSGDDIIRKIIEIWGQFRVPILAPLLRILMYVSLAMSIMLFLEKVYMSLVVGFNWLFLRKTEKRYKWEEFKKDVESGNSVYPLVLIQIPMFNEREVYQLSIGAACALSWPSDRIVIQVLDDSTDPIIKDMVEVECQKWASKGTNIHYQVRDNRKGYKAGALKEGLKHPYANECEYVAIFDADFQPEPDFLWKTIPFLYHNSTLGLVQTRWKFGKCSYKTFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G388860`
TK1151 ID	TkA02G388860
OH-1004 ID	LXL04_014884
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.700
Protein coverage (%)	TK1151 97.872 / OH-1004 12.372 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G388860

Location Chr02:98852397-98854293 (+)

Description Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03760`	Possesses glucomannan synthase and mannan synthase activities in vitro.	Agrobacterium-mediated root transformation is inhibited by mutation of an Arabidopsis cellulose synthase-like gene.2003 · DOI: 10.1104/pp.103.030726
`At5g22740`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release
`At2g35650`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	AtCSLA7, a cellulose synthase-like putative glycosyltransferase, is important for pollen tube growth and embryogenesis in Arabidopsis.2003 · DOI: 10.1104/pp.014555

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0192500`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release
`Os06g0625700`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014884 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.367

Rank 1 · TkA02G388860 · TK1151

Golgi apparatus0.238

Rank 2 · TkA02G388860 · TK1151

Cytoplasm0.115

Rank 3 · TkA02G388860 · TK1151

Plastid0.099

Rank 4 · TkA02G388860 · TK1151

Cell membrane0.093

Rank 5 · TkA02G388860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00535Glycos_transf_2102-231 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G388860	`PF00535`	Glycos_transf_2	102	231	1.7e-10	41.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LZR3`	Arabidopsis thaliana	sp\|Q9LZR3\|CSLA9_ARATH Glucomannan 4-beta-mannosyltransferase 9	66.500%	Swiss-Prot	High
`Q9FNI7`	Arabidopsis thaliana	sp\|Q9FNI7\|CSLA2_ARATH Glucomannan 4-beta-mannosyltransferase 2	65.000%	Swiss-Prot	High
`Q9ZQN8`	Arabidopsis thaliana	sp\|Q9ZQN8\|CSLA7_ARATH Glucomannan 4-beta-mannosyltransferase 7	55.000%	Swiss-Prot	High
`Q7PC76`	Oryza sativa subsp. japonica	sp\|Q7PC76\|CSLA1_ORYSJ Glucomannan 4-beta-mannosyltransferase 1	63.900%	Swiss-Prot	High
`Q67VS7`	Oryza sativa subsp. japonica	sp\|Q67VS7\|CSLA9_ORYSJ Probable glucomannan 4-beta-mannosyltransferase 9	58.500%	Swiss-Prot	High

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