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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G383710
Reference: TK1151 Chr: Chr02 Coordinates: 97506765-97510907 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2273 bp · TkA02G383710|TK1151|cDNA

CTTTGAGGGGCCACAACATTATATTTAGTGTTCTATGTAGGTTTTTAAAGTAAAGTTATGGGCTCACCCCCACTCCCTCCGCCTACTGAGACGGCAATAAATAAATACGATAAGCCCAAACTTTTATTATAGAGTCCTGTAAATCCTTTGTCATCTTTACCTGAGAATTTTGAATCATTTTACTTGAGAAGAAGATTGCAAGACTAAGCTAAAAGCCAGGTGCATGCTACCAGAAGAAATTAAGAATTTCCAACAATGGA...

CDS

Download CDS FASTA

1692 bp · TkA02G383710|TK1151|CDS

ATGGATGTTTTCAGTGAAATTATGAAGCCGGTTGTTCAGGTTCTCATGGTTCCTGCAAAAAAAGAACTAGGTTATTTGATTTCATGTGCAACACATGTGAAGGACATGCGTAGAAAAATGACAGAGTTGGAAGTTGCAAAATGCGGTGAGGAAGAGCACTTGAACCGGAACACAGAAAACCGTTTAGAGATTTCATCTCAAGTGAGGGAATGGTTGGAAAAAGTAAAAAACATTAATGCAAAGGTGGAAAACTTTCCAAG...

Protein

Download Protein FASTA

563 aa · TkA02G383710|TK1151|PROTEIN

MDVFSEIMKPVVQVLMVPAKKELGYLISCATHVKDMRRKMTELEVAKCGEEEHLNRNTENRLEISSQVREWLEKVKNINAKVENFPSEVGSCFNIMDRHKLGRKAFQILEEIESVTTQHSLITWSDRPIPLGRVDSTRTSVSAPLTTNHHEDFQSRNQTFLEALKAFQPNHKSHMIALCGMGGVGKTTMMEKLKKVAEKKKTFNYIVEVVIGENTDPIAAIQDVVATYIGIELKEKDKRARANKLCQGFKAKSDGGKNKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G383710
TK1151 IDTkA02G383710
OH-1004 IDLXL04_014925
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)92.000
Protein coverage (%)TK1151 100.000 / OH-1004 41.753
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G383710
LocationChr02:97506765-97510907 (-)
DescriptionSimilar to RPS2: Disease resistance protein RPS2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At1g12280 Disease resistance protein that mediates defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000, and the virulent oomycete Hyaloperonospora arabidopsidis isolate Noco2.
The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.2012 · DOI: 10.1105/tpc.112.097253
At5g43740 Probable disease resistance protein. No verified direct reference in this release
At5g47250 Probable disease resistance protein. No verified direct reference in this release
At5g43730 Probable disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014925 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G12280
ath:AT1G61180
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.814
Rank 1 · TkA02G383710 · TK1151
Cytoplasm0.121
Rank 2 · TkA02G383710 · TK1151
Endoplasmic reticulum0.105
Rank 3 · TkA02G383710 · TK1151
Nucleus0.059
Rank 4 · TkA02G383710 · TK1151
Extracellular0.037
Rank 5 · TkA02G383710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24073DUF73655-86 aa
PF00005ABC_tran31-82 aa
PF00006ATP-synt_ab52-99 aa
PF03308MeaB147-195 aa
PF25199nSTAND_NTPase5159-192 aa
PF12847Methyltransf_18161-202 aa
PF03193RsgA_GTPase162-199 aa
PF07693KAP_NTPase163-254 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G383710PF24073DUF73655860.08613.7
TkA02G383710PF00005ABC_tran31820.2112.9
TkA02G383710PF00006ATP-synt_ab52990.1912.1
TkA02G383710PF03308MeaB1471950.112.3
TkA02G383710PF25199nSTAND_NTPase51591920.02115.4
TkA02G383710PF12847Methyltransf_181612020.07813.7
TkA02G383710PF03193RsgA_GTPase1621990.004217.7
TkA02G383710PF07693KAP_NTPase1632540.009915.8
TkA02G383710PF00006ATP-synt_ab1642210.1912.1
TkA02G383710PF24883NPHP3_N1691940.1712.8
TkA02G383710PF00931NB-ARC1703313.5e-2692.5
TkA02G383710PF20720nSTAND31702010.08613.2
TkA02G383710PF13191AAA_161712140.02515.8
TkA02G383710PF04665Pox_A321722900.02714.7
TkA02G383710PF25201nSTAND61722010.1912.5
TkA02G383710PF00005ABC_tran1721970.2112.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722028.200%Swiss-ProtLow
P60838Arabidopsis thalianasp|P60838|SUMM2_ARATH Disease resistance protein SUMM227.500%Swiss-ProtLow
Q9FG90Arabidopsis thalianasp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g4374027.500%Swiss-ProtLow
Q9LVT4Arabidopsis thalianasp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g4725027.100%Swiss-ProtLow
Q9FG91Arabidopsis thalianasp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g4373028.800%Swiss-ProtLow

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