TkA02G382350 | RubberDandelionOmics

Gene overview

TkA02G382350

Reference: TK1151 Chr: Chr02 Coordinates: 97206570-97211980 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2534 bp · TkA02G382350|TK1151|cDNA

GAGTTCTCAATTTTTCTCCTTTGGGGTTTTCGCTTCAGATTAACAACGGAAATTAACAAATTCTTTGACCCCTATCCCCTTTCCCATCCAACCGTTCCTTATGTTCTTGTTCTTCTTTGATTTGCTGCATAATTTGTTTCCAGTTTTGCTTTTTCCAAAGCAATTTCATAACAGGGCCACAGAGAAGTTCAATGGAAATTGTGGTCAAATTTGACCTGATTCCTTCTGTTGTTTTTCTCATGCAAGTAATCAATCGCTTC...

CDS

Download CDS FASTA

2142 bp · TkA02G382350|TK1151|CDS

ATGATCTTACCAGCTTTACTGACCTCTGCTGGTTTCAATATCGTGATTTGTGTGGGATTCTTCTCGCTATATTCGATATTGAGAAAACAACCGGTTAATCTAAAAGTATACTTCGGGCAAAGGCTTGCACAGCTAAAGCCCGAACAAAAAAATTATTATTTTGGTCAAAGACTTGTCCCATCTGCAGGGTGGTTAGTCAAGGCATGGGAAGCATCAGATGATGACATCTACCGTTGTGGTGGTATCGATGGACTCGTTTT...

Protein

Download Protein FASTA

713 aa · TkA02G382350|TK1151|PROTEIN

MILPALLTSAGFNIVICVGFFSLYSILRKQPVNLKVYFGQRLAQLKPEQKNYYFGQRLVPSAGWLVKAWEASDDDIYRCGGIDGLVFIKMIVFSIRIFSVASVLCIFIVLPVNLFGQAIQERDAEAQMDMFTIRNVRAGSKGLWAHFFALYVVSISAYILLYVEFKSVARLRLEQVIRFPTKPSHFTVLVRGIPWCPGEAYSETVSKHFGSYYESSYLAHQMVYRSGTIQRLMMDAEKMYNVLKETTIPEGESEGPSAGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G382350`
TK1151 ID	TkA02G382350
OH-1004 ID	LXL04_014938
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G382350

Location Chr02:97206570-97211980 (+)

Description Similar to RXW8: CSC1-like protein RXW8

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g58520`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g10090`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At3g01100`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g69450`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At3g21620`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014938 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007231 osmosensory signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005227 calcium-activated cation channel activity Molecular Function

GO:0008381 mechanosensitive monoatomic ion channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G10090

ath:AT1G58520

ath:AT1G69450

ath:AT3G01100

ath:AT3G54510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.571

Rank 1 · TkA02G382350 · TK1151

Lysosome / Vacuole0.164

Rank 2 · TkA02G382350 · TK1151

Cytoplasm0.144

Rank 3 · TkA02G382350 · TK1151

Endoplasmic reticulum0.129

Rank 4 · TkA02G382350 · TK1151

Golgi apparatus0.080

Rank 5 · TkA02G382350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13967RSN1_TM5-163 aa

PF06440DNA_pol3_theta26-48 aa

PF14703PHM7_cyt185-339 aa

PF13967RSN1_TM297-317 aa

PF06440DNA_pol3_theta297-321 aa

PF02714RSN1_7TM350-612 aa

PF13967RSN1_TM355-379 aa

PF13967RSN1_TM564-590 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G382350	`PF13967`	RSN1_TM	5	163	6.6e-33	114.3
TkA02G382350	`PF06440`	DNA_pol3_theta	26	48	0.052	14.0
TkA02G382350	`PF14703`	PHM7_cyt	185	339	1.4e-21	78.2
TkA02G382350	`PF13967`	RSN1_TM	297	317	6.6e-33	114.3
TkA02G382350	`PF06440`	DNA_pol3_theta	297	321	0.052	14.0
TkA02G382350	`PF02714`	RSN1_7TM	350	612	6.3e-63	213.4
TkA02G382350	`PF13967`	RSN1_TM	355	379	6.6e-33	114.3
TkA02G382350	`PF13967`	RSN1_TM	564	590	6.6e-33	114.3
TkA02G382350	`PF13967`	RSN1_TM	621	665	6.6e-33	114.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IBD7`	Arabidopsis thaliana	sp\|F4IBD7\|OSC21_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.1	48.100%	Swiss-Prot	Medium
`Q94A87`	Arabidopsis thaliana	sp\|Q94A87\|OSC22_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.2	46.400%	Swiss-Prot	Medium
`Q8GUH7`	Arabidopsis thaliana	sp\|Q8GUH7\|OSC23_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.3	40.600%	Swiss-Prot	Medium
`F4I248`	Arabidopsis thaliana	sp\|F4I248\|OSC24_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.4	35.600%	Swiss-Prot	Medium
`Q9LVE4`	Arabidopsis thaliana	sp\|Q9LVE4\|OSC15_ARATH Hyperosmolality-gated Ca2+ permeable channel 1.5	29.100%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card