TkA02G381230 | RubberDandelionOmics

Gene overview

TkA02G381230

Reference: TK1151 Chr: Chr02 Coordinates: 96892229-96901778 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2914 bp · TkA02G381230|TK1151|cDNA

AAAGAAACGTGATGCACGGTGATATTTACACTGATCAAAAAGACTTTGAAGAGTAATCATCGATCCCACTGCTTTTTGTCGCGTTTCCTTCTCGTCATTGGGGTCTTGGTCTTCGTCTACGCTTAATCAATGCATTTCCTGTAAAGGACCTTTTCTCTTGTTCAAATACACAATCTTATATAGCTATTTGTGACTTCCTTCTTAGTAGCTAGTTGGAGCTCAATTAGACTTCCTAATAAGCTTTTCCACTTAATGCTTGA...

CDS

Download CDS FASTA

1815 bp · TkA02G381230|TK1151|CDS

ATGGACATGGACTCTGTTGAAAACGACGATGTACCAATGTTAACGACAACAAATTGGTCATCTGAAAGTCATGATCTTGGTCCAACAAATCATAGAAATTTACACAGGAGCAGAACAGCTGTTTCAATATCAATCCCCGGGAGCTCCATTGAAATGAATCCTGGTCCAACAAATCGTGTTGGCTTTACAGGTCCCTTACGTAGTGAAAGAAATACTCAGAGACAAGAAAGGGAGCCTATGGTACGAAGAACCACAGGACA...

Protein

Download Protein FASTA

604 aa · TkA02G381230|TK1151|PROTEIN

MDMDSVENDDVPMLTTTNWSSESHDLGPTNHRNLHRSRTAVSISIPGSSIEMNPGPTNRVGFTGPLRSERNTQRQEREPMVRRTTGHYNHQNEHLMKSGPLGMCDDPYCTTCPTAYKARLMSRNSRYHLDDVWYRGAKMRVKEKLWLIKNFLFGVMNPHAKAVQQWNQFLVISCLCAIFIDPLFFYLLSVNKECKCIMINWPMTKTIVIFRSMTDLIYLLHILVQFRLAFVSPESRVVGAGDLVDHPRKIALHYLSGFFF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G381230`
TK1151 ID	TkA02G381230
OH-1004 ID	LXL04_014957
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 48.907 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G381230

Location Chr02:96892229-96901778 (+)

Description Similar to CNGC20: Probable cyclic nucleotide-gated ion channel 20, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17700`	Probable cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At3g17690`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At1g19780`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At4g01010`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At1g01340`	Probable cyclic nucleotide-gated ion channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014957 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0033198 response to ATP Biological Process

GO:0080027 response to herbivore Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0005216 monoatomic ion channel activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0030552 cAMP binding Molecular Function

GO:0030553 cGMP binding Molecular Function

GO:0099604 ligand-gated calcium channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G19780

ath:AT3G17690

ath:AT3G17700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.890

Rank 1 · TkA02G381230 · TK1151

Cytoplasm0.096

Rank 2 · TkA02G381230 · TK1151

Endoplasmic reticulum0.049

Rank 3 · TkA02G381230 · TK1151

Nucleus0.028

Rank 4 · TkA02G381230 · TK1151

Golgi apparatus0.023

Rank 5 · TkA02G381230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00520Ion_trans166-489 aa

PF13067DUF3930205-230 aa

PF13067DUF3930314-340 aa

PF07885Ion_trans_2433-487 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G381230	`PF00520`	Ion_trans	166	489	9.4e-17	61.7
TkA02G381230	`PF13067`	DUF3930	205	230	0.15	12.6
TkA02G381230	`PF13067`	DUF3930	314	340	0.15	12.6
TkA02G381230	`PF07885`	Ion_trans_2	433	487	0.074	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LD37`	Arabidopsis thaliana	sp\|Q9LD37\|CNG20_ARATH Probable cyclic nucleotide-gated ion channel 20, chloroplastic	56.000%	Swiss-Prot	High
`Q9LDR2`	Arabidopsis thaliana	sp\|Q9LDR2\|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19	52.700%	Swiss-Prot	High
`Q9FXH6`	Arabidopsis thaliana	sp\|Q9FXH6\|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8	40.700%	Swiss-Prot	Medium
`Q9LD40`	Arabidopsis thaliana	sp\|Q9LD40\|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13	36.900%	Swiss-Prot	Medium
`Q9LNJ0`	Arabidopsis thaliana	sp\|Q9LNJ0\|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10	36.700%	Swiss-Prot	Medium

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