TkA02G373770 | RubberDandelionOmics

Gene overview

TkA02G373770

Reference: TK1151 Chr: Chr02 Coordinates: 95152940-95156882 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2542 bp · TkA02G373770|TK1151|cDNA

TTACACTTTCCATTTTCCAAAATTTCCACCTCCAACCCCCGCGCCCAACTTCTTCCTTTTGACGCCTACCCCCACTCGACTGCTACACACTCTTCTTCTACATGTATTCATCTATTTGTCTACCATTGACCATCCGACCCAGATTTGATTCTCTCTTTATACACGACAGTTGTAATTCCGCTTTTTAACTCAATTCTCTATGTACCCTTTTTCATTAACTTCTCTTAATTCTCCCAAATTCCTGTTTCTTGATGCCCCCT...

CDS

Download CDS FASTA

1080 bp · TkA02G373770|TK1151|CDS

ATGGGGGTAGACTTGTCAAAAGCTACAACACCAAATGCTGCAACCACAAAATACACAAATTTCTTATTAGCAACTGCATCTGGAAAAGTTGAAGGAGTAAAAGGTCCTGGAGAACTTGCCACCCTTTTTGAAAAAACTAAGGTTGCAGCATATACACTAAGTGCCATGGCCCCATGTATGAGGCTTTATGTTTTTCTTGGTAATGAGCTCAAATTGCTTCTGGATTCTGATGGCAATCAACACCCCTACAAGAAATTGAT...

Protein

Download Protein FASTA

359 aa · TkA02G373770|TK1151|PROTEIN

MGVDLSKATTPNAATTKYTNFLLATASGKVEGVKGPGELATLFEKTKVAAYTLSAMAPCMRLYVFLGNELKLLLDSDGNQHPYKKLIDKYSSEKYQATMLQIEDLLDKLSVSLTGQELDTMQKLYHQALKLEMEFFLAQPVDQSTVLPLSKQHNPSENRLMIFSDFDLTCSVVDSSAILAEIAIVTAPKSDQTQPLESQSQSQIIRMPSVDLRNTWEVLSKEYTEEYEQCMESMLATEKVESFDYEGLKKALEQLVQFER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G373770`
TK1151 ID	TkA02G373770
OH-1004 ID	LXL04_015025
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 98.329 / OH-1004 60.622 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G373770

Location Chr02:95152940-95156882 (-)

Description Similar to TH2: Bifunctional TH2 protein, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g32470`	May be involved in the salvage of thiamine breakdown products.	Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase.2016 · DOI: 10.1105/tpc.16.00600

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015025 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006772 thiamine metabolic process Biological Process

GO:0009228 thiamine biosynthetic process Biological Process

GO:0009229 thiamine diphosphate biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004789 thiamine-phosphate diphosphorylase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008902 hydroxymethylpyrimidine kinase activity Molecular Function

GO:0008972 phosphomethylpyrimidine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G32470

cef:CE1591

hin:HI_0358

spo:2539837

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.475

Rank 1 · TkA02G373770 · TK1151

Nucleus0.211

Rank 2 · TkA02G373770 · TK1151

Mitochondrion0.163

Rank 3 · TkA02G373770 · TK1151

Plastid0.125

Rank 4 · TkA02G373770 · TK1151

Peroxisome0.105

Rank 5 · TkA02G373770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03070TENA_THI-46-28 aa

PF03070TENA_THI-450-136 aa

PF03726PNPase85-110 aa

PF03070TENA_THI-4225-235 aa

PF03726PNPase238-279 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G373770	`PF03070`	TENA_THI-4	6	28	2.5e-07	31.4
TkA02G373770	`PF03070`	TENA_THI-4	50	136	2.5e-07	31.4
TkA02G373770	`PF03726`	PNPase	85	110	0.29	12.4
TkA02G373770	`PF03070`	TENA_THI-4	225	235	2.5e-07	31.4
TkA02G373770	`PF03726`	PNPase	238	279	0.29	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4KFT7`	Arabidopsis thaliana	sp\|F4KFT7\|TENAC_ARATH Bifunctional TH2 protein, mitochondrial	65.400%	Swiss-Prot	High

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