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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G362510
Reference: TK1151 Chr: Chr02 Coordinates: 92204509-92207383 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

477 bp · TkA02G362510|TK1151|cDNA

ATGGAAGGTGTTGAAGTAACGGCGATACAATCAATCCGTGGTCTTGAAGTAATTACGGCTATACCATCAACAGGAGATCGGACATCGGAGGATTTCATGGAAGATAATCATCCGATTTCATGGAAGGGGAAGTTAAACAATTCAAAAGAATTGAATTGTGAGGTAAAAGGTTGTATAGGTGGTGAGATATTGAGAAACTGGCCAAAAACGACGTCGTATAGCTCTGCTACAGTACCAGACGCGCGGATCTATTTCGGGTC...

CDS

Download CDS FASTA

477 bp · TkA02G362510|TK1151|CDS

ATGGAAGGTGTTGAAGTAACGGCGATACAATCAATCCGTGGTCTTGAAGTAATTACGGCTATACCATCAACAGGAGATCGGACATCGGAGGATTTCATGGAAGATAATCATCCGATTTCATGGAAGGGGAAGTTAAACAATTCAAAAGAATTGAATTGTGAGGTAAAAGGTTGTATAGGTGGTGAGATATTGAGAAACTGGCCAAAAACGACGTCGTATAGCTCTGCTACAGTACCAGACGCGCGGATCTATTTCGGGTC...

Protein

Download Protein FASTA

158 aa · TkA02G362510|TK1151|PROTEIN

MEGVEVTAIQSIRGLEVITAIPSTGDRTSEDFMEDNHPISWKGKLNNSKELNCEVKGCIGGEILRNWPKTTSYSSATVPDARIYFGSDPGRRVGVIVLWIGIEDGEGCNRCGTDRLRIDLKITDRLRIDLKITDEIAGGGGADADGGGRRCGYGIDGC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G362510
TK1151 IDTkA02G362510
OH-1004 IDLXL04_009082
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.700
Protein coverage (%)TK1151 29.114 / OH-1004 9.761
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G362510
LocationChr02:92204509-92207383 (+)
DescriptionSimilar to E2FC: Transcription factor E2FC
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009082 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000082 G1/S transition of mitotic cell cycle Biological Process
GO:0000902 cell morphogenesis Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0008284 positive regulation of cell population proliferation Biological Process
GO:0009733 response to auxin Biological Process
GO:0010090 trichome morphogenesis Biological Process
GO:0012501 programmed cell death Biological Process
GO:0019760 glucosinolate metabolic process Biological Process
GO:0042023 DNA endoreduplication Biological Process
KEGG gene cross-reference
ath:AT1G47870
ath:AT2G36010
ath:AT5G22220
mmu:13557
mmu:242705
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.361
Rank 1 · TkA02G362510 · TK1151
Nucleus0.304
Rank 2 · TkA02G362510 · TK1151
Cell membrane0.210
Rank 3 · TkA02G362510 · TK1151
Mitochondrion0.102
Rank 4 · TkA02G362510 · TK1151
Endoplasmic reticulum0.065
Rank 5 · TkA02G362510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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