TkA02G361870 | RubberDandelionOmics

Gene overview

TkA02G361870

Reference: TK1151 Chr: Chr02 Coordinates: 92033870-92038624 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1289 bp · TkA02G361870|TK1151|cDNA

AAAAGAGACATATAAGTCCAAAACAACCATGTCGAAAGAGAGTTTCAAGGAGCTATATGCTCGTACCAAGCCTATTATGCTCATGATCGTCTTGCAAACTTCATATGCTATTAATGATTTAGTTGTGAAGGCAGCCCTAAATAAGGGCTTAAATCATTTTACTTTTGTCGTATACCGAAACGCCATTGCAGCTCTCTTCTTTGGTCCTTTCGCTTTCTTCCTCGAAAAGAATCTTAGGCCAGAGATGACAGTTTCCATCT...

CDS

Download CDS FASTA

1137 bp · TkA02G361870|TK1151|CDS

ATGTCGAAAGAGAGTTTCAAGGAGCTATATGCTCGTACCAAGCCTATTATGCTCATGATCGTCTTGCAAACTTCATATGCTATTAATGATTTAGTTGTGAAGGCAGCCCTAAATAAGGGCTTAAATCATTTTACTTTTGTCGTATACCGAAACGCCATTGCAGCTCTCTTCTTTGGTCCTTTCGCTTTCTTCCTCGAAAAGAATCTTAGGCCAGAGATGACAGTTTCCATCTTCCTGAAGATCTTGTTACTGGGATTTAT...

Protein

Download Protein FASTA

378 aa · TkA02G361870|TK1151|PROTEIN

MSKESFKELYARTKPIMLMIVLQTSYAINDLVVKAALNKGLNHFTFVVYRNAIAALFFGPFAFFLEKNLRPEMTVSIFLKILLLGFIEPVNQNLFYAGMIFTTATFASSMCNILPAIAFVMAWIFRLEKVKIRSLHGQGKIIGTIVTTGGAMIMTFMRGPTIQFPWTSFHPLHHQSTVTIMSTQDQIKGSLMITVSCFTWASFFILQAVTLKSYPAQLSLTALVCMMGSLEGSILALIVERANVSIWSINWDIKLFAAIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G361870`
TK1151 ID	TkA02G361870
OH-1004 ID	LXL04_021962
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	74.900
Protein coverage (%)	TK1151 99.471 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G361870

Location Chr02:92033870-92038624 (-)

Description Similar to At2g39510: WAT1-related protein At2g39510

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39510`	WAT1-related protein At2g39510.	No verified direct reference in this release
`At2g37460`	WAT1-related protein At2g37460.	No verified direct reference in this release
`At5g13670`	WAT1-related protein At5g13670.	No verified direct reference in this release
`At4g08290`	WAT1-related protein At4g08290.	No verified direct reference in this release
`At1g21890`	WAT1-related protein At1g21890.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021962 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009620 response to fungus Biological Process

GO:0048316 seed development Biological Process

GO:0098712 L-glutamate import across plasma membrane Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015186 L-glutamine transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G21890

ath:AT2G37460

ath:AT2G39510

ath:AT4G08290

ath:AT5G13670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.456

Rank 1 · TkA02G361870 · TK1151

Lysosome / Vacuole0.200

Rank 2 · TkA02G361870 · TK1151

Endoplasmic reticulum0.193

Rank 3 · TkA02G361870 · TK1151

Golgi apparatus0.073

Rank 4 · TkA02G361870 · TK1151

Cytoplasm0.068

Rank 5 · TkA02G361870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA15-146 aa

PF11022ATP19142-160 aa

PF00892EamA188-327 aa

PF12657TFIIIC_delta188-257 aa

PF11022ATP19297-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G361870	`PF00892`	EamA	15	146	2e-25	90.4
TkA02G361870	`PF11022`	ATP19	142	160	0.097	13.7
TkA02G361870	`PF00892`	EamA	188	327	2e-25	90.4
TkA02G361870	`PF12657`	TFIIIC_delta	188	257	0.09	12.6
TkA02G361870	`PF11022`	ATP19	297	350	0.097	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80638`	Arabidopsis thaliana	sp\|O80638\|WTR14_ARATH WAT1-related protein At2g39510	51.700%	Swiss-Prot	High
`Q9ZUS1`	Arabidopsis thaliana	sp\|Q9ZUS1\|WTR13_ARATH WAT1-related protein At2g37460	50.700%	Swiss-Prot	High
`Q9FNA5`	Arabidopsis thaliana	sp\|Q9FNA5\|WTR39_ARATH WAT1-related protein At5g13670	50.300%	Swiss-Prot	High
`Q9SUF1`	Arabidopsis thaliana	sp\|Q9SUF1\|WTR31_ARATH WAT1-related protein At4g08290	47.900%	Swiss-Prot	Medium
`F4HZQ7`	Arabidopsis thaliana	sp\|F4HZQ7\|WTR5_ARATH WAT1-related protein At1g21890	47.600%	Swiss-Prot	Medium

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