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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G351730
Reference: TK1151 Chr: Chr02 Coordinates: 89452005-89455355 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2105 bp · TkA02G351730|TK1151|cDNA

AATAAGTACACCCACCTTCTTACATGATGATTAAACTCAAAAAGAAAGAGACCAGATCCATCACTTTCACATCTCTCTATCTTTCTTCCCTTAAAAACGTTTAATTTATGCTTTTCCTTTGCCTTTCAAACTTTACTAAAATCCGCCCTTCTTGATTGCATCCTTTAACCTAACAAAATAATCAATTGCTACAAAGATTTCACATTTCATCTTCCTACTCAACCCCCTTCCTTTTAAAGAATTGAATCTCCAAGAAATTA...

CDS

Download CDS FASTA

1470 bp · TkA02G351730|TK1151|CDS

ATGACATCTGAACAACTGCACGGTCAAACATCACATCAAGAACTCAAAGCTTCCAACCGCCATGGAACCCTAATGGAGGATGATGATGGTGATGACACAACAGGCGTTTCCTTAACTTGCCTCAGTTTATACACCCGGGGTGGAGGGTGCCGAGTTGGAGCCGCAACAACCGACGAGTTCAGCGAACTCGGTACCAAACCCGCATGCGGGTCCCACAACACGAGTGTCGATTGTTTCTCATATGGAGTGGAGAAACTTTG...

Protein

Download Protein FASTA

489 aa · TkA02G351730|TK1151|PROTEIN

MTSEQLHGQTSHQELKASNRHGTLMEDDDGDDTTGVSLTCLSLYTRGGGCRVGAATTDEFSELGTKPACGSHNTSVDCFSYGVEKLWKKNHTKKKYLEAEESLTNTSKMHVFLPDDILEMCLMRLPLPSLMNTRLVCKKWRSLTTAPRFLQLRKDGFYPSPWLFLFGTVKDGYSSREIYAFDVSLKKWHKIESEILTGRFLFSVARVHDTVFIVGGSSSRKTHRGVLVFTPVTKSWRKVASMRHARSKPVLGVYEVNSDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G351730
TK1151 IDTkA02G351730
OH-1004 IDLXL04_035768
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)56.200
Protein coverage (%)TK1151 97.546 / OH-1004 94.374
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G351730
LocationChr02:89452005-89455355 (-)
DescriptionSimilar to At5g42350: F-box/kelch-repeat protein At5g42350
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g42350 F-box/kelch-repeat protein At5g42350. No verified direct reference in this release
At5g42360 F-box/kelch-repeat protein At5g42360. No verified direct reference in this release
At2g24540 Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035768 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0008361 regulation of cell size Biological Process
GO:0009585 red, far-red light phototransduction Biological Process
GO:0010017 red or far-red light signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G30090
ath:AT2G24540
ath:AT5G15710
ath:AT5G42350
ath:AT5G42360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.792
Rank 1 · TkA02G351730 · TK1151
Cytoplasm0.195
Rank 2 · TkA02G351730 · TK1151
Cell membrane0.064
Rank 3 · TkA02G351730 · TK1151
Endoplasmic reticulum0.043
Rank 4 · TkA02G351730 · TK1151
Mitochondrion0.022
Rank 5 · TkA02G351730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box113-150 aa
PF12937F-box-like113-147 aa
PF24681Kelch_KLHDC2_KLHL20_DRC7163-244 aa
PF07646Kelch_2163-191 aa
PF13964Beta-prop_Calicin165-245 aa
PF01344Kelch_1173-192 aa
PF13415Beta-prop_FBX42173-241 aa
PF24981Beta-prop_ATRN-LZTR1174-310 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G351730PF00646F-box1131504.2e-1039.8
TkA02G351730PF12937F-box-like1131471.9e-0628.2
TkA02G351730PF24681Kelch_KLHDC2_KLHL20_DRC71632443.4e-1556.6
TkA02G351730PF07646Kelch_21631910.0215.6
TkA02G351730PF13964Beta-prop_Calicin1652451.1e-1041.7
TkA02G351730PF01344Kelch_11731921.3e-1557.3
TkA02G351730PF13415Beta-prop_FBX421732414.6e-0730.4
TkA02G351730PF24981Beta-prop_ATRN-LZTR11743106.9e-1142.7
TkA02G351730PF13418Beta-prop_TYW41762620.0004520.9
TkA02G351730PF03478Beta-prop_KIB1-41862418.6e-0626.2
TkA02G351730PF01344Kelch_11992431.3e-1557.3
TkA02G351730PF25210Kelch_FKB952032532.1e-0834.9
TkA02G351730PF07646Kelch_22092420.0215.6
TkA02G351730PF07734FBA_12243880.005916.4
TkA02G351730PF00646F-box2322424.2e-1039.8
TkA02G351730PF12937F-box-like2342411.9e-0628.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FII2Arabidopsis thalianasp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g4235047.800%Swiss-ProtMedium
Q9FII1Arabidopsis thalianasp|Q9FII1|FK118_ARATH F-box/kelch-repeat protein At5g4236047.500%Swiss-ProtMedium
Q8LAW2Arabidopsis thalianasp|Q8LAW2|AFR_ARATH F-box protein AFR26.900%Swiss-ProtLow

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