Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1173 bp · TkA02G348660|TK1151|cDNA
ATGTCTTTCGAAATAGGAGAGAACGTGGAGGTCATCGGCAATGAAGATGGAATGGACGGGTCCTACTTTGCGGGGAATGTGATTGACCGCTCACTTGGTAGGAGAAGAATCAAGTATGACACTTTGATTGCTGATGATGGATCTTGTCTAGAAGAGGTGATCAACATTAGGAGACTCTGTCCCCCTCCTCCCACTGTGTTCGCGCGATTTCATCTTGGATACATGGTTGATGCTTGGCACAATGAAGGATGGTGGGTAGG...
2958 bp · TkA02G348660|TK1151|CDS
ATGTCTTTCGAAATAGGAGAGAACGTGGAGGTCATCGGCAATGAAGATGGAATGGACGGGTCCTACTTTGCGGGGAATGTGATTGACCGCTCACTTGGTAGGAGAAGAATCAAGTATGACACTTTGATTGCTGATGATGGATCTTGTCTAGAAGAGGTGATCAACATTAGGAGACTCTGTCCCCCTCCTCCCACTGTGTTCGCGCGATTTCATCTTGGATACATGGTTGATGCTTGGCACAATGAAGGATGGTGGGTAGG...
Protein
Download Protein FASTA985 aa · TkA02G348660|TK1151|PROTEIN
MSFEIGENVEVIGNEDGMDGSYFAGNVIDRSLGRRRIKYDTLIADDGSCLEEVINIRRLCPPPPTVFARFHLGYMVDAWHNEGWWVGRGTRGLRQGDHLSPFLFILVMEGLHVAMEDAVNHGWFKGVRVGGNLLLINLHKSKLYGVGVPQATVQDVAIWTGCGADSIPFVKMLSVGGRLTLLKSVLGSLGNYYFSMFRAPVTVIKKLEKMRARFFWGMTEEEKKLQWVKWDLILNDKDKGGLSVGSLSAINHALVYKWRW...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G348660 |
|---|---|
| TK1151 ID | TkA02G348660 |
| OH-1004 ID | LXL04_015285 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.700 |
| Protein coverage (%) | TK1151 48.528 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G348660 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:88620007-88626330 (+) | |||||||||
| Description | Similar to sdr42e1: Short-chain dehydrogenase/reductase family 42E member 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006694 steroid biosynthetic process Biological Process GO:0016020 membrane Cellular Component GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function | |||||||||
| KEGG gene cross-reference | dre:565964 hsa:93517 mcf:101925751 mmu:74032 xla:779408 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05641Agenet6-64 aaPF00078RVT_190-112 aaPF13966zf-RVT389-453 aaPF08659KR416-435 aaPF14934TMEM254453-482 aaPF00106adh_short519-586 aaPF05368NmrA520-604 aaPF08659KR521-595 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G348660 | PF05641 | Agenet | 6 | 64 | 1.5e-07 | 32.5 |
| TkA02G348660 | PF00078 | RVT_1 | 90 | 112 | 0.33 | 11.5 |
| TkA02G348660 | PF13966 | zf-RVT | 389 | 453 | 2e-16 | 61.1 |
| TkA02G348660 | PF08659 | KR | 416 | 435 | 0.00096 | 19.8 |
| TkA02G348660 | PF14934 | TMEM254 | 453 | 482 | 1.8e-23 | 83.7 |
| TkA02G348660 | PF00106 | adh_short | 519 | 586 | 0.016 | 15.4 |
| TkA02G348660 | PF05368 | NmrA | 520 | 604 | 0.0011 | 19.3 |
| TkA02G348660 | PF08659 | KR | 521 | 595 | 0.00096 | 19.8 |
| TkA02G348660 | PF01073 | 3Beta_HSD | 522 | 800 | 6.9e-82 | 275.3 |
| TkA02G348660 | PF01370 | Epimerase | 522 | 749 | 4.3e-35 | 122.0 |
| TkA02G348660 | PF02719 | Polysacc_synt_2 | 522 | 640 | 2.3e-09 | 37.6 |
| TkA02G348660 | PF16363 | GDP_Man_Dehyd | 523 | 748 | 4e-21 | 76.6 |
| TkA02G348660 | PF07993 | NAD_binding_4 | 523 | 682 | 2.1e-10 | 40.9 |
| TkA02G348660 | PF13460 | NAD_binding_10 | 525 | 675 | 8.2e-13 | 49.3 |
| TkA02G348660 | PF01728 | FtsJ | 540 | 604 | 0.011 | 16.4 |
| TkA02G348660 | PF16363 | GDP_Man_Dehyd | 849 | 870 | 4e-21 | 76.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.