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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G345330
Reference: TK1151 Chr: Chr02 Coordinates: 87698020-87704670 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

3666 bp · TkA02G345330|TK1151|CDS

ATGAGCAACTTTGAGTATCTGTTATTGTTGAATAAAACAGCTGGAAGGAGATGGGGGGACCACACATTCCACACTGTCATGCCATGGGTTATTGACTTCAGTGTTAAACCAGATGAAAGTAATGAAACCGGTTGGAGGAATTTAACAAAAAGTAAATGGCGGTTAGCAAAAGGTGATGAACAGTTGGACTTCACATACCTAACATCTGAAATCCCTCACCATGTTTCAGATGAATGTCTTTCAGAACTTGCTGTCTGTAG...

Protein

Download Protein FASTA

1221 aa · TkA02G345330|TK1151|PROTEIN

MSNFEYLLLLNKTAGRRWGDHTFHTVMPWVIDFSVKPDESNETGWRNLTKSKWRLAKGDEQLDFTYLTSEIPHHVSDECLSELAVCSYKARRLPLSVLRTAVRSVYEPNEYPSTMHRLYQWTPDESIPEFYTNPEIFRSVHSGMSDLAVPSWASGPEEFVKLHREALESDRVSSQIHHWIDIIFGYKMSGEAAIDAKNVMLQPSQPANARSAGRRQLFSIPHPARCHWSKNAVNSKKLLLLHDTSNLQALEEAATFIEHA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G345330
TK1151 IDTkA02G345330
OH-1004 IDLXL04_015347
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 77.083
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G345330
LocationChr02:87698020-87704670 (+)
DescriptionSimilar to GFS12: Protein GFS12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18525 May act predominantly to suppress BCHC1, which itself is a negative factor in protein storage vacuole (PSV) trafficking regulation and plant effector triggered immunity (ETI).
BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis.2015 · DOI: 10.1016/j.molp.2014.11.015

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015347 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006623 protein targeting to vacuole Biological Process
GO:0035973 aggrephagy Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045022 early endosome to late endosome transport Biological Process
GO:2000643 positive regulation of early endosome to late endosome transport Biological Process
GO:0000421 autophagosome membrane Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005769 early endosome Cellular Component
GO:0005770 late endosome Cellular Component
KEGG gene cross-reference
ath:AT5G18525
ddi:DDB_G0268088
dre:100333062
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.427
Rank 1 · TkA02G345330 · TK1151
Nucleus0.320
Rank 2 · TkA02G345330 · TK1151
Golgi apparatus0.160
Rank 3 · TkA02G345330 · TK1151
Cell membrane0.111
Rank 4 · TkA02G345330 · TK1151
Endoplasmic reticulum0.099
Rank 5 · TkA02G345330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02138Beach1-204 aa
PF24805EIF3I14-60 aa
PF07714PK_Tyr_Ser-Thr332-404 aa
PF00069Pkinase334-408 aa
PF23410Beta-prop_VPS8707-750 aa
PF12656G-patch_2800-844 aa
PF25172Beta-prop_WDR3_2nd881-912 aa
PF25171Beta-prop_WDR36-Utp21_1st884-947 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G345330PF02138Beach12041e-37130.8
TkA02G345330PF24805EIF3I14601.9e-0628.0
TkA02G345330PF07714PK_Tyr_Ser-Thr3324040.05413.5
TkA02G345330PF00069Pkinase3344080.0002121.5
TkA02G345330PF23410Beta-prop_VPS87077501.88.2
TkA02G345330PF12656G-patch_28008440.311.9
TkA02G345330PF25172Beta-prop_WDR3_2nd8819123.8e-0936.9
TkA02G345330PF25171Beta-prop_WDR36-Utp21_1st8849472.4e-1247.6
TkA02G345330PF00400WD408849238.8e-0936.2
TkA02G345330PF25391WD40_Gbeta8879641.8e-0731.2
TkA02G345330PF25178Beta-prop_WDR418879760.002417.4
TkA02G345330PF24796WDR558899795.2e-0936.3
TkA02G345330PF24814WD40_Prp1989611313.3e-1763.2
TkA02G345330PF25047Beta-prop_TEP1_2nd9179721.6e-0938.0
TkA02G345330PF23098Beta-prop_NOL10_N9179761.7e-0524.9
TkA02G345330PF25173Beta-prop_WDR3_1st9189751.7e-1454.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JY12Arabidopsis thalianasp|F4JY12|GFS12_ARATH Protein GFS1255.600%Swiss-ProtHigh

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