TkA02G344170 | RubberDandelionOmics

Gene overview

TkA02G344170

Reference: TK1151 Chr: Chr02 Coordinates: 87405255-87406995 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

818 bp · TkA02G344170|TK1151|cDNA

CCTAAGTGCACCCTACCTGCTATCGGACATCAGTTTTGTGATACAGAGAGGAGGAAGAGCAGAGTGAAGGAAACCGCCGCTATGTCGAAGAGAAAGGTTAGGGAGCCAAAGGAAGAAAATGTCACCCTTGGACCTGCAACCCGTGAGGGAGAGCTTGTATTTGGTGTAGCACACATCTTTGCATCCTTCAATGATACCTTCATTCATGTGACTGATATCTCCGGAAGAGAAACCATGGTCCGGATTACTGGTGGGATGAA...

CDS

Download CDS FASTA

543 bp · TkA02G344170|TK1151|CDS

ATGTCGAAGAGAAAGGTTAGGGAGCCAAAGGAAGAAAATGTCACCCTTGGACCTGCAACCCGTGAGGGAGAGCTTGTATTTGGTGTAGCACACATCTTTGCATCCTTCAATGATACCTTCATTCATGTGACTGATATCTCCGGAAGAGAAACCATGGTCCGGATTACTGGTGGGATGAAGGTTAAGGCCGACAGGGATGAATCCTCACCCTATGCAGCTATGCTTGCTGCACAAGATGTCTCCCAAAGATGCAAGGAACT...

Protein

Download Protein FASTA

180 aa · TkA02G344170|TK1151|PROTEIN

MSKRKVREPKEENVTLGPATREGELVFGVAHIFASFNDTFIHVTDISGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIGKFILLSIKYLVLECEIPFHGSDSMNVVIAEDVTPIPTDSTRRKGGRRGRRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G344170`
TK1151 ID	TkA02G344170
OH-1004 ID	LXL04_007592
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G344170

Location Chr02:87405255-87406995 (-)

Description Similar to RPS14C: 40S ribosomal protein S14-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52580`	Small ribosomal subunit protein uS11x.	No verified direct reference in this release
`At3g11510`	Small ribosomal subunit protein uS11y.	No verified direct reference in this release
`At2g36160`	Small ribosomal subunit protein uS11z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007592 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000028 ribosomal small subunit assembly Biological Process

GO:0006412 translation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0022627 cytosolic small ribosomal subunit Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

KEGG gene cross-reference

ath:AT2G36160

ath:AT3G11510

ath:AT3G52580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.738

Rank 1 · TkA02G344170 · TK1151

Nucleus0.278

Rank 2 · TkA02G344170 · TK1151

Plastid0.098

Rank 3 · TkA02G344170 · TK1151

Endoplasmic reticulum0.084

Rank 4 · TkA02G344170 · TK1151

Mitochondrion0.046

Rank 5 · TkA02G344170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00411Ribosomal_S1128-128 aa

PF00411Ribosomal_S11153-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G344170	`PF00411`	Ribosomal_S11	28	128	6.2e-42	143.2
TkA02G344170	`PF00411`	Ribosomal_S11	153	176	6.2e-42	143.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P42036`	Arabidopsis thaliana	sp\|P42036\|RS143_ARATH Small ribosomal subunit protein uS11x	91.300%	Swiss-Prot	High
`Q9CAX6`	Arabidopsis thaliana	sp\|Q9CAX6\|RS142_ARATH Small ribosomal subunit protein uS11y	90.700%	Swiss-Prot	High
`Q9SIH0`	Arabidopsis thaliana	sp\|Q9SIH0\|RS141_ARATH Small ribosomal subunit protein uS11z	90.000%	Swiss-Prot	High

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